hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20214802/chunk_1/iprscan-20080501-20214802.nocrc
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Query sequence: KIAA1208
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00004                                                  52.0    7.5e-11   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00004    1/2     125   163 ..     1    42 []    39.3    5e-07
SM00004    2/2     192   230 ..     1    42 []    12.7    0.032

Alignments of top-scoring domains:
SM00004: domain 1 of 2, from 125 to 163: score 39.3, E = 5e-07
                   *->pqdpwsrCeplydaqCw.dkfgDGvCDeeCNnaeClwDGgDCs<-*
                       + p ++C    +++C ++ ++DG+CD++CNn +C+wDGgDCs   
    KIAA1208   125    LTWPVPNC----AEGCPgSWIKDGYCDKACNNSACDWDGGDCS    163  

SM00004: domain 2 of 2, from 192 to 230: score 12.7, E = 0.032
                   *->pqdpwsrCeplydaqCw.dkfgDGvCDeeCNnaeClwDGgDCs<-*
                        +  s C    +++C+++  +D++CD++CN   C++D gDC    
    KIAA1208   192    GINSVSYC----NQGCAnSWLADKFCDQACNVLSCGFDAGDCG    230  

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