hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20214802/chunk_1/iprscan-20080501-20214802.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1208 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06464.2.ls DMAP1-binding Domain 149.2 1e-41 1 PF06464.2.fs DMAP1-binding Domain 147.3 3.9e-41 1 PF00066.8.fs Notch (DSL) domain 42.5 4e-10 2 PF00066.8.ls Notch (DSL) domain 43.2 8.5e-10 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00066.8.ls 1/2 127 163 .. 1 42 [] 28.3 1.1e-05 PF00066.8.fs 1/2 142 163 .. 21 42 .] 29.5 9.5e-07 PF06464.2.fs 1/1 393 508 .. 1 116 [] 147.3 3.9e-41 PF06464.2.ls 1/1 393 508 .. 1 116 [] 149.2 1e-41 Alignments of top-scoring domains: PF00066.8.ls: domain 1 of 2, from 127 to 163: score 28.3, E = 1.1e-05 *->sevsrdlCeakykrkC.aerfaNGvCNqeCNnaaCgfDGgDCs<-* +v + C ++C+ + ++G C+ +CNn aC +DGgDCs KIAA1208 127 WPVPN--CA----EGCpGSWIKDGYCDKACNNSACDWDGGDCS 163 PF00066.8.fs: domain 1 of 2, from 142 to 163: score 29.5, E = 9.5e-07 *->aNGvCNqeCNnaaCgfDGgDCs<-* ++G C+ +CNn aC +DGgDCs KIAA1208 142 KDGYCDKACNNSACDWDGGDCS 163 PF06464.2.fs: domain 1 of 1, from 393 to 508: score 147.3, E = 3.9e-41 *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr ++++LP++++ +L+ Ldl+L++gdiT KGy+++K++LL++FL+++q+ KIAA1208 393 NISLLPKDAQLSLNTLDLQLEHGDITLKGYNLSKSALLRSFLMNSQH 439 tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa +kik+qa++tdet+++l++pq+++ +++++++s +se+ ++ +++a+++ KIAA1208 440 AKIKNQAIITDETNDSLVAPQEKQVHKSILPNSLGVSERLQRLTFPAVSV 489 kelerengkpmpskersgl<-* k+ ++++g+++p+ +++++ KIAA1208 490 KVNGHDQGQNPPLDLETTA 508 PF06464.2.ls: domain 1 of 1, from 393 to 508: score 149.2, E = 1e-41 *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr ++++LP++++ +L+ Ldl+L++gdiT KGy+++K++LL++FL+++q+ KIAA1208 393 NISLLPKDAQLSLNTLDLQLEHGDITLKGYNLSKSALLRSFLMNSQH 439 tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa +kik+qa++tdet+++l++pq+++ +++++++s +se+ ++ +++a+++ KIAA1208 440 AKIKNQAIITDETNDSLVAPQEKQVHKSILPNSLGVSERLQRLTFPAVSV 489 kelerengkpmpskersgl<-* k+ ++++g+++p+ +++++ KIAA1208 490 KVNGHDQGQNPPLDLETTA 508 //