hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20182240/chunk_1/iprscan-20080501-20182240.nocrc
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Query sequence: KIAA1206
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00630                                                 306.6    1.8e-87   1
SM00429                                                 167.5    1.3e-45   3
SM00423                                                  85.0    8.8e-21   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00630    1/1      57   458 ..     1   532 []   306.6  1.8e-87
SM00423    1/3     476   529 ..     1    56 []    51.6    1e-10
SM00423    2/3     623   685 ..     1    56 []    15.5      1.1
SM00423    3/3     790   836 ..     1    56 []    18.0     0.66
SM00429    1/3     837   928 ..     1   111 []    74.1  1.8e-17
SM00429    2/3     929  1015 ..     1   111 []    66.1  4.3e-15
SM00429    3/3    1017  1148 ..     1   111 []    27.3   0.0021

Alignments of top-scoring domains:
SM00630: domain 1 of 1, from 57 to 458: score 306.6, E = 1.8e-87
                   *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps
                      +nhl+l +++g  +lyVGA+Nr+++Ls p+l+l++++vtgpv+d+p+
    KIAA1206    57    LNHLALAPGRG--TLYVGAVNRLFQLS-PELQLEAVAVTGPVIDSPD 100  

                   ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv
                   c +           +a++     ++++++dN +++Llv+++    + L++
    KIAA1206   101 CVP--------FRDPAEC-----PQAQLTDNANQLLLVSSR---AQELVA 134  

                   CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg
                   CG +++g+   C+ ++lgd         +  +l+++++       ++g+ 
    KIAA1206   135 CGQVRQGV---CETRRLGD---------VAEVLYQAED------PGDGQF 166  

                   kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs
                   ++ + P ++++++vv    Pg + L ++         ls ++++p+ +R 
    KIAA1206   167 VAANTPGVATVGLVVPL--PGRDLLLVARG-LAGK--LS-AGVPPLAIRQ 210  

                   lgttqdgfefefhslrttiydskwgydlnepnFVyaFeipesgdgdfVYF
                   l ++q+   f++++l +++  +++    ++  +V+aF++        +YF
    KIAA1206   211 LAGSQP---FSSEGLGRLVVGDFS---DYNNSYVGAFAD-----ARSAYF 249  

                   FFrEtaveainrdcssekavvsRVARvCknDvGGqrlLqkkWtSFLKarL
                   +Fr +   a    ++    ++s+VARvC++D         + +S+++++L
    KIAA1206   250 VFRRRGARA----QA---EYRSYVARVCLGD--------TNLYSYVEVPL 284  

                   nCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVFsqgqq
                    C     g       +++Qa+fl+p               l gVF+    
    KIAA1206   285 ACQ----G------QGLIQAAFLAPG-------------TLLGVFA---- 307  

                   tssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpvegnkv
                    + r   +++   A+CaF++ +  a++++ +  cy+ + +     e++ v
    KIAA1206   308 AGPR---GTQA--ALCAFPMVELGASMEQARRLCYTAGGRGPSGAEEATV 352  

                   PyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPltgrP
                    y   + C           ++++d P++++++ ++ p+++ +++Pl+ +P
    KIAA1206   353 EYGVTSRC----------VTLPLDSPESYPCGDEHTPSPIAGRQPLEVQP 392  

                   llvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdGrvlKvvvsrss
                   ll   +  +   ++a+ +++g       + ++FlG ++G+++Kv +    
    KIAA1206   393 LLKLGQ-PV--SAVAALQADG-------HMIAFLGDTQGQLYKVFL---- 428  

                   sssssaglesvlleelqvfppgsepirdmvlsskk<-*
                        +g++ +++ + qv+ppgs++++d++l+s+    
    KIAA1206   429 -----HGSQGQVYHSQQVGPPGSAISPDLLLDSSG    458  

SM00423: domain 1 of 3, from 476 to 529: score 51.6, E = 1e-10
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C q+  ++C++Cl+a+dp  CgWC+++grCtr+++C+++ ++ q +
    KIAA1206   476    ACPQF--PDCASCLQAQDPL-CGWCVLQGRCTRKGQCGRAGQLNQWL 519  

                   ssg.pssqCp<-*
                    s++  s+C    
    KIAA1206   520 WSYeEDSHCL    529  

SM00423: domain 2 of 3, from 623 to 685: score 15.5, E = 1.1
                   *->rCsqygv....tsCseCllardpygCgWCssegrCtrgerCderrgs
                      +Cs+  + +    C +C+++ ++  C+WC+  ++C+ ge+C+e++ +
    KIAA1206   623    DCSAVQAleaaAPCRACVGSIWR--CHWCPQSSHCVYGEHCPEGERT 667  

                   rqnwssg.....pssqCp<-*
                   ++++   + + ++   Cp   
    KIAA1206   668 IYSAQEVdiqvrGPGACP    685  

SM00423: domain 3 of 3, from 790 to 836: score 18.0, E = 0.66
                   *->rCsqygvtsCseCllardpygCgWCss.egrCtrgerCderrgsrqn
                      +C+ ++ ++Cs C +a    gC WC++++ +C  g+ C++       
    KIAA1206   790    DCAMGH-PDCSHCQAANRSLGCLWCADgQPACRYGPLCPP-----GA 830  

                   wssgpssqCp<-*
                   ++      Cp   
    KIAA1206   831 VEL----LCP    836  

SM00429: domain 1 of 3, from 837 to 928: score 74.1, E = 1.8e-17
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                       P+I +++P +Gp +GG   +t+ G+nL+  + +v + v v+    +
    KIAA1206   837    APSIDAVEPLTGPPEGGL-ALTILGSNLGRAFADVQYAVSVA----S 878  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   +pC+++ps +     s  ivC+t p++n   ++g+v+v     ++    g
    KIAA1206   879 RPCNPEPSLYR---TSARIVCVTSPAPNG--TTGPVRV----AIKSQPPG 919  

                   vrtelsppspFtYv<-*
                   +++     ++FtY    
    KIAA1206   920 ISS-----QHFTYQ    928  

SM00429: domain 2 of 3, from 929 to 1015: score 66.1, E = 4.3e-15
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      dPv +++sP++Gp +GGt  +t++G++L++ g   + +vg      +
    KIAA1206   929    DPVLLSLSPRWGPQAGGT-QLTIRGQHLQT-GGNTSAFVG------G 967  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   +pC +l      +  ++aivCrt p++     pg++ v     v f++++
    KIAA1206   968 QPCPILE-----PVCPEAIVCRTRPQA----APGEAAV----LVVFGHAQ 1004 

                   vrtelsppspFtYv<-*
                   +  +    spF+Y+   
    KIAA1206  1005 RTLL---ASPFRYT    1015 

SM00429: domain 3 of 3, from 1017 to 1148: score 27.3, E = 0.0021
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      +P   + +Ps +++ GG+ +i ++G+ Ld+ ++++  +v +     e
    KIAA1206  1017    NPQLVAAEPSASFRGGGR-LIRVRGTGLDV-VQRPLLSVWL-----E 1056 

                   vpCtflpsdvhG..................................kdss
                   + ++++ s  + ++++++++ + +  +++   + +++  + ++  +++ss
    KIAA1206  1057 ADAEVQASRAQPqdpqprrscgapaadpqaciqlgggllqcstvcsVNSS 1106 

                   taivCrtPpylnqspgpgsvpvrvtgevgfdnggvrtelsppspFtYv<-
                   + ++Cr+P+ +++  +p  v ++++ +v++d +  ++     + F Y   
    KIAA1206  1107 SLLLCRSPAVPDRA-HPQRVFFTLD-NVQVDFASASG----GQGFLYQ   1148 

                   *
                    
    KIAA1206     -   -    

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