hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20182240/chunk_1/iprscan-20080501-20182240.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1206 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08337.2.ls Plexin cytoplasmic region 1233.2 0 1 PF08337.2.fs Plexin cytoplasmic region 1231.4 0 1 PF01833.14.fs IPT/TIG domain 148.7 2.8e-42 4 PF01833.14.ls IPT/TIG domain 150.8 3.4e-42 4 PF01437.15.fs Plexin repeat 109.7 2.7e-35 3 PF01437.15.ls Plexin repeat 108.1 2.4e-29 3 PF01403.10.fs Sema domain 31.2 1.3e-08 1 PF01403.10.ls Sema domain -51.2 2.8e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.fs 1/1 57 150 .. 1 99 [. 31.2 1.3e-08 PF01403.10.ls 1/1 57 457 .. 1 490 [] -51.2 2.8e-08 PF01437.15.ls 1/3 476 529 .. 1 63 [] 68.0 2.9e-17 PF01437.15.fs 1/3 476 529 .. 1 63 [] 66.1 4.7e-21 PF01437.15.fs 3/3 790 836 .. 1 63 [] 28.0 1.4e-08 PF01437.15.ls 3/3 790 836 .. 1 63 [] 29.7 9.5e-06 PF01833.14.ls 1/4 838 927 .. 1 104 [] 55.6 1.5e-13 PF01833.14.fs 1/4 838 927 .. 1 104 [] 53.8 6.7e-15 PF01833.14.ls 2/4 930 1014 .. 1 104 [] 70.8 4e-18 PF01833.14.fs 2/4 930 1014 .. 1 104 [] 69.0 2.8e-19 PF01833.14.ls 3/4 1018 1147 .. 1 104 [] 21.6 0.0026 PF01833.14.fs 3/4 1018 1147 .. 1 104 [] 19.8 4.4e-05 PF01833.14.ls 4/4 1162 1246 .. 1 104 [] 2.7 0.42 PF08337.2.fs 1/1 1329 1879 .. 1 586 [] 1231.4 0 PF08337.2.ls 1/1 1329 1879 .. 1 586 [] 1233.2 0 Alignments of top-scoring domains: PF01403.10.fs: domain 1 of 1, from 57 to 150: score 31.2, E = 1.3e-08 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpssp.gee +++l l + rg+LyVGA N+++ L+ ++l++ ++ ++g+ ++++++ KIAA1206 57 LNHLALAPGRGTLYVGAVNRLFQLS-PELQLEAVAVTGPVIDSpDCV 102 kceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlin + ++ + + + t+++N +++ + ++ L++CG + q+vC +++ KIAA1206 103 PFRDPAECPQAQ---LTDNANQLLLVSSRAQE-LVACGQVR-QGVCETRR 147 lgd<-* lgd KIAA1206 148 LGD 150 PF01403.10.ls: domain 1 of 1, from 57 to 457: score -51.2, E = 2.8e-08 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpssp.gee +++l l + rg+LyVGA N+++ L+ ++l++ ++ ++g+ ++++++ KIAA1206 57 LNHLALAPGRGTLYVGAVNRLFQLS-PELQLEAVAVTGPVIDSpDCV 102 kceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlin + ++ + + + t+++N +++ + ++ L++CG + q+vC +++ KIAA1206 103 PFRDPAECPQAQ---LTDNANQLLLVSSRAQE-LVACGQVR-QGVCETRR 147 lgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvq...gr lgd +e L+ + +++ ++G+ + P ++++++v ++ KIAA1206 148 LGDVAE--------VLYQA-EDP-GDGQFVAANTPGVATVGLVVPlpgR- 186 tgeLYsGtvaDssvaasFsGrdpaIrRslg....shdplrTeqhdskwln + L ++ + +++ a ++ aIr + g+++ s+++l + + + + KIAA1206 187 -DLLLVARGLAGKLSAGVPP--LAIRQLAGsqpfSSEGLGRLVVGDFSDY 233 ePnFVdsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCkn ++V++++ YF Fr + + + s+VaRvC + KIAA1206 234 NNSYVGAFADA-------RSAYFVFRRRGARAQ----AEYRSYVARVCLG 272 DvGGrrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptgan D + +y+e + L C G + +Qa+fl+p KIAA1206 273 DTNLYSYVE---------VPLAC--QG--QGL------IQAAFLAPG--- 300 lAreLgIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGp + GVF+ + + ++ A+CaF+m + ++ KIAA1206 301 ------------TLLGVFAAGPRGTQA-----ALCAFPMVELGASM---- 329 fkhqssEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtln E+++ ++ g R G + y t l KIAA1206 330 ------EQARRLCYT-AG-----GR-GPSGAEEATVEYGVTSRCVTLPLD 366 fikshpLmdevvpP..lhnrPl....fvgtsvnyrlTqIaVdkrVragdG +s+p de +p++ ++Pl+ +++ + + ++ ++a+ +a + KIAA1206 367 SPESYPCGDEHTPSpiAGRQPLevqpLLKLGQPV--SAVAAL---QADG- 410 qlYtVlFlGTddGtvlKkvvvlsrssssyeevvleelqvfkdpriePvqn + ++FlG +G ++ kv +++ v+ qv +++ ++++ KIAA1206 411 --HMIAFLGDTQGQLY-KVFLHGSQGQ-----VYHSQQVGPPG--SAISP 450 leisskq<-* ++++ + KIAA1206 451 DLLLDSS 457 PF01437.15.ls: domain 1 of 3, from 476 to 529: score 68.0, E = 2.9e-17 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. C q+++C+sCL+a+dp CgWC+++grCtr++ +C r+ + KIAA1206 476 ACPQFPDCASCLQAQDP-LCGWCVLQGRCTRKG-------QCGRAGq 514 pendqwldwswssskCp<-* + qwl++ s+C KIAA1206 515 LN--QWLWSYEEDSHCL 529 PF01437.15.fs: domain 1 of 3, from 476 to 529: score 66.1, E = 4.7e-21 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. C q+++C+sCL+a+dp CgWC+++grCtr++ +C r+ + KIAA1206 476 ACPQFPDCASCLQAQDP-LCGWCVLQGRCTRKG-------QCGRAGq 514 pendqwldwswssskCp<-* + qwl++ s+C KIAA1206 515 LN--QWLWSYEEDSHCL 529 PF01437.15.fs: domain 3 of 3, from 790 to 836: score 28.0, E = 1.4e-08 *->nCsqy.tsCssCLaardpfyCgWCss.egrCtrgsaytsfygeCprs +C+ +++Cs+C aa++ ++C WC++++ C +g+ +Cp++ KIAA1206 790 DCAMGhPDCSHCQAANRSLGCLWCADgQPACRYGP-------LCPPG 829 ependqwldwswssskCp<-* + ++ Cp KIAA1206 830 A-----------VELLCP 836 PF01437.15.ls: domain 3 of 3, from 790 to 836: score 29.7, E = 9.5e-06 *->nCsqy.tsCssCLaardpfyCgWCss.egrCtrgsaytsfygeCprs +C+ +++Cs+C aa++ ++C WC++++ C +g+ +Cp++ KIAA1206 790 DCAMGhPDCSHCQAANRSLGCLWCADgQPACRYGP-------LCPPG 829 ependqwldwswssskCp<-* + ++ Cp KIAA1206 830 A-----------VELLCP 836 PF01833.14.ls: domain 1 of 4, from 838 to 927: score 55.6, E = 1.5e-13 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P+I +++P++gp +GG +Ti+Gsnlg f d + V+ KIAA1206 838 PSIDAVEPLTGPPEGGLALTILGSNLG---------RAFADVQYAVS 875 fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdgggsgdg ++++p C++ +s + ++ ivC+t p+++g + p v+v +++++ KIAA1206 876 VASRP--CNPEPSLYRtsARIVCVTSPAPnGTTGP--VRVAIKSQP---- 917 rssspvtFtY<-* + s+++FtY KIAA1206 918 PGISSQHFTY 927 PF01833.14.fs: domain 1 of 4, from 838 to 927: score 53.8, E = 6.7e-15 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P+I +++P++gp +GG +Ti+Gsnlg f d + V+ KIAA1206 838 PSIDAVEPLTGPPEGGLALTILGSNLG---------RAFADVQYAVS 875 fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdgggsgdg ++++p C++ +s + ++ ivC+t p+++g + p v+v +++++ KIAA1206 876 VASRP--CNPEPSLYRtsARIVCVTSPAPnGTTGP--VRVAIKSQP---- 917 rssspvtFtY<-* + s+++FtY KIAA1206 918 PGISSQHFTY 927 PF01833.14.ls: domain 2 of 4, from 930 to 1014: score 70.8, E = 4e-18 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt Pv s+sP++gp +GGt++Ti+G++l++g +++ + KIAA1206 930 PVLLSLSPRWGPQAGGTQLTIRGQHLQTG------------GNTSAF 964 fggtpvpCdvisssss.tqivCktPpva.ggpsppvvtvsvdgggsgdgr +gg+p C + +++ ivC+t p+a +g++ v v +++++ r KIAA1206 965 VGGQP--CPILEPV-CpEAIVCRTRPQAaPGEAA--VLVVFGHAQ----R 1005 ssspvtFtY<-* + +F+Y KIAA1206 1006 TLLASPFRY 1014 PF01833.14.fs: domain 2 of 4, from 930 to 1014: score 69.0, E = 2.8e-19 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt Pv s+sP++gp +GGt++Ti+G++l++g +++ + KIAA1206 930 PVLLSLSPRWGPQAGGTQLTIRGQHLQTG------------GNTSAF 964 fggtpvpCdvisssss.tqivCktPpva.ggpsppvvtvsvdgggsgdgr +gg+p C + +++ ivC+t p+a +g++ v v +++++ r KIAA1206 965 VGGQP--CPILEPV-CpEAIVCRTRPQAaPGEAA--VLVVFGHAQ----R 1005 ssspvtFtY<-* + +F+Y KIAA1206 1006 TLLASPFRY 1014 PF01833.14.ls: domain 3 of 4, from 1018 to 1147: score 21.6, E = 0.0026 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P + +Ps+++ +GG i ++G++l+ +++P + V+ KIAA1206 1018 PQLVAAEPSASFRGGGRLIRVRGTGLDVVQRPLLS----------VW 1054 fggtpv.......................................pCdvi + + + ++ ++++++++++ + + +++ + +++ + ++ C v+ KIAA1206 1055 LEADAEvqasraqpqdpqprrscgapaadpqaciqlgggllqcstVCSVN 1104 ssssstqivCktPpva.ggpsppvvtvsvdggg.sgdgrssspvtFtY<- sss + C++P+v++ + v++++d+++ + + s ++ F Y KIAA1206 1105 SSSL---LLCRSPAVPdRAHPQR-VFFTLDNVQvD-FASASGGQGFLY 1147 * KIAA1206 - - PF01833.14.fs: domain 3 of 4, from 1018 to 1147: score 19.8, E = 4.4e-05 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P + +Ps+++ +GG i ++G++l+ +++P + V+ KIAA1206 1018 PQLVAAEPSASFRGGGRLIRVRGTGLDVVQRPLLS----------VW 1054 fggtpv.......................................pCdvi + + + ++ ++++++++++ + + +++ + +++ + ++ C v+ KIAA1206 1055 LEADAEvqasraqpqdpqprrscgapaadpqaciqlgggllqcstVCSVN 1104 ssssstqivCktPpva.ggpsppvvtvsvdggg.sgdgrssspvtFtY<- sss + C++P+v++ + v++++d+++ + + s ++ F Y KIAA1206 1105 SSSL---LLCRSPAVPdRAHPQR-VFFTLDNVQvD-FASASGGQGFLY 1147 * KIAA1206 - - PF01833.14.ls: domain 4 of 4, from 1162 to 1246: score 2.7, E = 0.42 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt + +++ P g + + G++l+ g i k e ++V KIAA1206 1162 ARPYRLKP--GHVLD-----VEGEGLNLG----ISK-----EEVRVH 1192 fggtpvpCdvissssstqivCktPpva.ggpsppv...vtvsvdgggsgd +g + C v+ + t++ C+ P++a++ ++ +++ v++++++ KIAA1206 1193 IGRGE--CLVKTLTR-THLYCEPPAHApQPANGSGlpqFVVQMGNVQ--- 1236 grssspvtFtY<-* + pv+++ KIAA1206 1237 -LALGPVQYEA 1246 PF08337.2.fs: domain 1 of 1, from 1329 to 1879: score 1231.4, E = 0 *->sGiPfLDYktYaeRvFFpkpGhedHPvLkdle.v.pesraptveegL sGiPfLDY+tYaeR FF pGh +P+++++e++++ tv++gL KIAA1206 1329 SGIPFLDYRTYAERAFF--PGHGGCPLQPKPEgPgEDGHCATVRQGL 1373 tqFsqLLnNKsFLltfIhTLEsQrsFSvRDRvnvASLLmvaLqgKLeYcT tq+s+LLn+K+FLlt+IhTLE+Q+sFS+RDR++vASLL aL+gKLeY+T KIAA1206 1374 TQLSNLLNSKLFLLTLIHTLEEQPSFSQRDRCHVASLLSLALHGKLEYLT 1423 dILktLLrdLIeksvesKnnPKLmLRRTESVVEKMLTNWmSiCLYdfLKe dI++tLL+dL +++ ++ nPKLmLRRTE++VEK+LTNW+SiCLY fL+e KIAA1206 1424 DIMRTLLGDLAAHY-VHR-NPKLMLRRTETMVEKLLTNWLSICLYAFLRE 1471 taGepLflLfkAIKqQieKGPVDAvTgkARYTLnEekLLReqveykpltl +aGepL++Lf+AI++Q++KGPVDAvTgkA++TLn+++LLRe+ve++pltl KIAA1206 1472 VAGEPLYMLFRAIQYQVDKGPVDAVTGKAKRTLNDSRLLREDVEFQPLTL 1521 nCVilevqpegdeadg...vrnvpVkVLDCDTItQVKeKiLdavYkgtPy + V+ v+p + a+g++++++vp +VLD+DTItQVKeK+Ld+vYkgtP+ KIAA1206 1522 M-VL--VGPGAGGAAGsseMQRVPARVLDTDTITQVKEKVLDQVYKGTPF 1568 SqRPrvedldLEWrtGrrghliLqDveDvTskiegglwKRLNTLaHYgVp SqRP+v+ ldLEWr+G++ghl+L+D eD+Ts+++++ wKRLNTL+HY+Vp KIAA1206 1569 SQRPSVHALDLEWRSGLAGHLTLSD-EDLTSVTQNH-WKRLNTLQHYKVP 1616 DGAtlaLvpkqntassynisilStksekstsiltdnssryestlrldssd DGAt+ Lvp+ + +s+ ++s ++ KIAA1206 1617 DGATVGLVPQLHRGSTISQS--------------------------LAQR 1640 dslgsrsdlledgqesGvklwHLVkPtdelveqkkgkRqslklkeredrk ++lg++ + ledg+e+Gv lwHLVk+t+e +e+ k + +sl+++e r+ KIAA1206 1641 CPLGENIPTLEDGEEGGVCLWHLVKATEE-PEGAKVRCSSLREREPA-RA 1688 KaipEIYLTRLLstKGTLQKFVDDLFesILStaHrnsalPlAvKYfFDFL KaipEIYLTRLLs+KGTLQKFVDD+F++ILS +n++ P+AvKY+FD+L KIAA1206 1689 KAIPEIYLTRLLSMKGTLQKFVDDTFQAILS---VNRPIPIAVKYLFDLL 1735 DeqAekhgIsDpDvvHiWKsNsLPLRFWVNiiKNPqFVFDIhKtdsvDAc De AekhgI+Dp ++HiWK+NsL LRFWVN +KNPq++FD+ ++d+vDA+ KIAA1206 1736 DELAEKHGIEDPGTLHIWKTNSLLLRFWVNALKNPQLIFDVRVSDNVDAI 1785 LSViAQTFMDACStsEhrLGKDSPSNKLLYAKDIPrYkkmVerYYkdIrd L+ViAQTF+D+C+tsEh++G+DSP+NKLLYA++IPrYk+mVerYY+dIr+ KIAA1206 1786 LAVIAQTFIDSCTTSEHKVGRDSPVNKLLYAREIPRYKQMVERYYADIRQ 1835 mppiSdQEMnaaLaeeSrkhsnefntlvALnELYkYvkKYrdqI<-* ++p+S+QEMn+aLae+S ++++ +++l AL ELY+++++Y+dqI KIAA1206 1836 SSPASYQEMNSALAELSGNYTSAPHCLEALQELYNHIHRYYDQI 1879 PF08337.2.ls: domain 1 of 1, from 1329 to 1879: score 1233.2, E = 0 *->sGiPfLDYktYaeRvFFpkpGhedHPvLkdle.v.pesraptveegL sGiPfLDY+tYaeR FF pGh +P+++++e++++ tv++gL KIAA1206 1329 SGIPFLDYRTYAERAFF--PGHGGCPLQPKPEgPgEDGHCATVRQGL 1373 tqFsqLLnNKsFLltfIhTLEsQrsFSvRDRvnvASLLmvaLqgKLeYcT tq+s+LLn+K+FLlt+IhTLE+Q+sFS+RDR++vASLL aL+gKLeY+T KIAA1206 1374 TQLSNLLNSKLFLLTLIHTLEEQPSFSQRDRCHVASLLSLALHGKLEYLT 1423 dILktLLrdLIeksvesKnnPKLmLRRTESVVEKMLTNWmSiCLYdfLKe dI++tLL+dL +++ ++ nPKLmLRRTE++VEK+LTNW+SiCLY fL+e KIAA1206 1424 DIMRTLLGDLAAHY-VHR-NPKLMLRRTETMVEKLLTNWLSICLYAFLRE 1471 taGepLflLfkAIKqQieKGPVDAvTgkARYTLnEekLLReqveykpltl +aGepL++Lf+AI++Q++KGPVDAvTgkA++TLn+++LLRe+ve++pltl KIAA1206 1472 VAGEPLYMLFRAIQYQVDKGPVDAVTGKAKRTLNDSRLLREDVEFQPLTL 1521 nCVilevqpegdeadg...vrnvpVkVLDCDTItQVKeKiLdavYkgtPy + V+ v+p + a+g++++++vp +VLD+DTItQVKeK+Ld+vYkgtP+ KIAA1206 1522 M-VL--VGPGAGGAAGsseMQRVPARVLDTDTITQVKEKVLDQVYKGTPF 1568 SqRPrvedldLEWrtGrrghliLqDveDvTskiegglwKRLNTLaHYgVp SqRP+v+ ldLEWr+G++ghl+L+D eD+Ts+++++ wKRLNTL+HY+Vp KIAA1206 1569 SQRPSVHALDLEWRSGLAGHLTLSD-EDLTSVTQNH-WKRLNTLQHYKVP 1616 DGAtlaLvpkqntassynisilStksekstsiltdnssryestlrldssd DGAt+ Lvp+ + +s+ ++s ++ KIAA1206 1617 DGATVGLVPQLHRGSTISQS--------------------------LAQR 1640 dslgsrsdlledgqesGvklwHLVkPtdelveqkkgkRqslklkeredrk ++lg++ + ledg+e+Gv lwHLVk+t+e +e+ k + +sl+++e r+ KIAA1206 1641 CPLGENIPTLEDGEEGGVCLWHLVKATEE-PEGAKVRCSSLREREPA-RA 1688 KaipEIYLTRLLstKGTLQKFVDDLFesILStaHrnsalPlAvKYfFDFL KaipEIYLTRLLs+KGTLQKFVDD+F++ILS +n++ P+AvKY+FD+L KIAA1206 1689 KAIPEIYLTRLLSMKGTLQKFVDDTFQAILS---VNRPIPIAVKYLFDLL 1735 DeqAekhgIsDpDvvHiWKsNsLPLRFWVNiiKNPqFVFDIhKtdsvDAc De AekhgI+Dp ++HiWK+NsL LRFWVN +KNPq++FD+ ++d+vDA+ KIAA1206 1736 DELAEKHGIEDPGTLHIWKTNSLLLRFWVNALKNPQLIFDVRVSDNVDAI 1785 LSViAQTFMDACStsEhrLGKDSPSNKLLYAKDIPrYkkmVerYYkdIrd L+ViAQTF+D+C+tsEh++G+DSP+NKLLYA++IPrYk+mVerYY+dIr+ KIAA1206 1786 LAVIAQTFIDSCTTSEHKVGRDSPVNKLLYAREIPRYKQMVERYYADIRQ 1835 mppiSdQEMnaaLaeeSrkhsnefntlvALnELYkYvkKYrdqI<-* ++p+S+QEMn+aLae+S ++++ +++l AL ELY+++++Y+dqI KIAA1206 1836 SSPASYQEMNSALAELSGNYTSAPHCLEALQELYNHIHRYYDQI 1879 //