# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg03511a.fasta.huge -Q ../query/KIAA1205.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1205, 1217 aa
 vs ./tmplib.24314 library

1986288 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 15.9657+/-0.0141; mu= -31.7648+/- 0.952
 mean_var=949.6606+/-224.947, 0's: 0 Z-trim: 29  B-trim: 8 in 1/39
 Lambda= 0.041619

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0754  ( 1174 res)   hh06485                    (1174)  364 38.3  0.0088


>>KIAA0754  ( 1174 res)   hh06485                         (1174 aa)
 initn: 725 init1: 194 opt: 364  Z-score: 141.8  bits: 38.3 E(): 0.0088
Smith-Waterman score: 370;  26.316% identity (44.518% similar) in 456 aa overlap (486-922:651-1078)

         460       470       480       490       500       510     
KIAA12 PEMKSGFMASFLDFLKSGKRHPPLYQAGLTPPLSPPKSVPPSVPARGLQPQPPATPAVPH
                                     :  .   .:  :::         ..:    
KIAA07 ALVPFPHEDILVASIVSLEEEDVTAAAVSAPERATVPAVTVSVPEGTAAVAAVSSPEETA
              630       640       650       660       670       680

         520         530       540       550       560        570  
KIAA12 PPPSGAFGLGG--ALEAAESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEE-DSVAKN
       :  ..:.   :  :. .   :  .:.   :  . :   .  .    .  . :: :..:  
KIAA07 PAVAAAITQEGMSAVAGFSPEWAALAITVPITEEDGTPEGPVTPATTVHAPEEPDTAAVR
              690       700       710       720       730       740

            580         590       600       610       620       630
KIAA12 RDLQESISSAISALDDP--PLAGPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPE
        .  :  .:  .:.  :  : .    . ::.  : .:::::: ::  :  :.: .  :::
KIAA07 VSTPEEPASPAAAVPTPEEPTSPAAAVPTPE-EPTSPAAAVP-PPEEPTSPAA-AVPTPE
              750       760       770        780        790        

              640       650       660       670        680         
KIAA12 PPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSP-PPPPLPPPPPPA
        :       :::    .:    : :  : .::   : :    .:..  : :  :  :  :
KIAA07 EPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAA
       800       810       820       830       840       850       

     690       700        710         720       730       740      
KIAA12 MPSPPPPPPPAAA-PLAAPPEEPAA--PSPEDPELPDTRPLHLAKKQETAAVCGETDEE-
       .:.:  :  :::: :    :  :::  :.::.: .: .  .   ... .:::   : :: 
KIAA07 VPTPEEPASPAAAVPTPEEPASPAAAVPTPEEPAFP-APAVPTPEESASAAVAVPTPEES
       860       870       880       890        900       910      

         750       760         770       780       790       800   
KIAA12 AGESGGEGIFRERDEF--VIRAEDIPSLKLALQTGREPPPIWRVQKALLQKFTPEIKDGQ
       :. ...     :   :  :. . . :.   :      : :   :  : :..::    .  
KIAA07 ASPAAAVPTPAESASFAAVVATLEEPTSPAA----SVPTPAAMV--ATLEEFTSPAAS--
        920       930       940           950         960          

           810       820       830       840       850       860   
KIAA12 RQFCATSNYLGYFGDAKNRYQRLYVKFLENVNKKDYVRVCARKPWHRPPVPVRRSGQAKN
            ::.  . .. : .             : .. .   :  :  . :.    .  . .
KIAA07 ---VPTSEEPASLAAAVS-------------NPEEPTSPAAAVPTLEEPTSSAAAVLTPE
         970       980                    990      1000      1010  

           870       880           890          900       910      
KIAA12 PVSAGGSSAPPPKAPAPPPKP----ETPEKTTSEKP-PE--QTPETAMPEPPAPEKPSLL
        .:. ..:.: :. :: :       : : . ..  : ::    : ...: : .:  :.  
KIAA07 ELSSPAASVPTPEEPASPAAAVSNLEEPASPAAAVPTPEVAAIPAASVPTPEVPAIPAAA
           1020      1030      1040      1050      1060      1070  

        920       930       940       950       960       970      
KIAA12 RPVEKEKEKEKVTRGERPLRGERATSGRQTRPERSLATGQPATSRLPKARPTKVKAEPPP
        :  .:                                                      
KIAA07 VPPMEEVSPIGVPFLGVSAHTDSVPISEEGTPVLEEASSTGMWIKEDLDSLVFGIKEVTS
           1080      1090      1100      1110      1120      1130  




1217 residues in 1 query   sequences
1986288 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:02 2008 done: Thu Dec 18 15:13:02 2008
 Total Scan time:  0.810 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]