hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20101282/chunk_1/iprscan-20080501-20101282.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1201
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02893.10.ls GRAM domain                                    109.8    7.6e-30   1
PF02893.10.fs GRAM domain                                    107.9    1.9e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02893.10.fs   1/1     119   186 ..     1    82 []   107.9  1.9e-29
PF02893.10.ls   1/1     119   186 ..     1    82 []   109.8  7.6e-30

Alignments of top-scoring domains:
PF02893.10.fs: domain 1 of 1, from 119 to 186: score 107.9, E = 1.9e-29
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      e+frk Fk +lp++E+Li d     ysC+lqr   +i++qGrlYl++
    KIAA1201   119    EDFRKLFK-QLPDTERLIVD-----YSCALQR---DILLQGRLYLSE 156  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n++cF+S++++++t      l+++l+di+++ ke+   
    KIAA1201   157 NWICFYSNIFRWET-----LLTVRLKDICSMTKEK    186  

PF02893.10.ls: domain 1 of 1, from 119 to 186: score 109.8, E = 7.6e-30
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      e+frk Fk +lp++E+Li d     ysC+lqr   +i++qGrlYl++
    KIAA1201   119    EDFRKLFK-QLPDTERLIVD-----YSCALQR---DILLQGRLYLSE 156  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n++cF+S++++++t      l+++l+di+++ ke+   
    KIAA1201   157 NWICFYSNIFRWET-----LLTVRLKDICSMTKEK    186  

//