hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20083538/chunk_1/iprscan-20080501-20083538.nocrc
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Query sequence: KIAA1200
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00139                                                 186.4    2.8e-51   1
SM00233                                                 132.1    5.9e-35   2
SM00295                                                  89.8    3.2e-22   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/2     618   713 ..     1    82 []    90.0  2.9e-22
SM00233     2/2     727   837 ..     1    82 []    42.2  7.1e-08
SM00139     1/1     871  1025 ..     1   166 []   186.4  2.8e-51
SM00295     1/1    1032  1269 ..     1   232 []    89.8  3.2e-22

Alignments of top-scoring domains:
SM00233: domain 1 of 2, from 618 to 713: score 90.0, E = 2.9e-22
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk.....kpkgsip
                      ++k+G+Llk++++ ++wk+r+fvL+ g+++yyks+++  +kp+g ++
    KIAA1200   618    LEKSGYLLKMGsqVkTWKRRWFVLRQGQIMYYKSPsdvirKPQGQVD 664  

                   Lsgc.svre.p...cFeivt.drtlllqAeseeereeWvealqsaiaka<
                   L++  ++++++++ +F+++++++t++l A+s++ +eeW++ lqs+++ + 
    KIAA1200   665 LNSRcQIVRgEgsqTFQLISeKKTYYLTADSPSLLEEWIRVLQSLLKVQ  713  

                   -*
                     
    KIAA1200     -    -    

SM00233: domain 2 of 2, from 727 to 837: score 42.2, E = 7.1e-08
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk...kpkgsipLsgc
                      ++ +GwL+k + ++ k +++ L ++ ++yy+s+++++p g++p++++
    KIAA1200   727    PTVKGWLTKVKHgHSKVVWCALVGKIFYYYRSHedkRPLGCLPVRDA 773  

                   svre.p......................cFeivt.dr..tlllqAeseee
                    ++e +++ +++++ + ++ ++  +++ ++ i+ +++++t+ll    + e
    KIAA1200   774 HIEEvDrscdsdedyeaggtrrllsshcTLVIHPtEHspTYLLIGT-KHE 822  

                   reeWvealqsaiaka<-*
                   ++ W+ +l  a+  +   
    KIAA1200   823 KDTWLYHLTVAAGGS    837  

SM00139: domain 1 of 1, from 871 to 1025: score 186.4, E = 2.8e-51
                   *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk
                      +sk+ +++sL++l+++   ++ eA+k+Fk+++ f++ +P++      
    KIAA1200   871    YSKDGLYASLTTLPSE--ALQTEALKLFKSCQLFIN-VPVEA----- 909  

                   lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt
                                 +s+d+h++l+q +lq +l +peL+ EiYCQl+KQ++
    KIAA1200   910 --------------ASVDYHVSLAQTALQVCLVHPELQSEIYCQLMKQTS 945  

                   kR.........GWeLLylctglFpPSeSrllkyLlqFLkrradqptetpq
                   +R++++ +  ++W+LL+lc+ lF+P++ ++l+y++q+L+r+ad+++et+ 
    KIAA1200   946 CRppqkyslmqCWQLLALCAPLFLPQH-HFLWYVKQQLQRHADPRSETG- 993  

                   lmaqglakycle........GaRkqpPsrlEleAik<-*
                       ++a+yc++  +++ ++G+R+  Psr+E+ +i+   
    KIAA1200   994 ----QYATYCQRavertlrtGEREARPSRMEVVSIL    1025 

SM00295: domain 1 of 1, from 1032 to 1269: score 89.8, E = 3.2e-22
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      ++ p+ + V++ +gt+  + +d s+t+ e+l+ + +++g+   ++ +
    KIAA1200  1032    HSLPFSIPVHFTNGTYHVVGFDGSSTVDEFLQRLNQEIGMRKPSHSG 1078 

                   FgLqfedkded..shWldpaktilkqdvks.............pkseplt
                   F+L+ +d+ + +  h+l+ + +i++++ k+++  ++ ++++++  +   +
    KIAA1200  1079 FALFTDDPSGRdlEHCLQGSVKICDAISKWeqamkelhpgkseGGTRVVK 1128 

                   lyFRvkFyppdwhgppeqlkeDptrynllylQvrddilsGrlpcpseeea
                   l ++ ++y++     + + + D  r+ ll  Q  ++i+ Gr+p + +e a
    KIAA1200  1129 LMYKNRLYFRS----QVKGETDRERL-LLASQTSREIVAGRFPIN-KELA 1172 

                   llLAaLalqaefGdydpeeeek....kkslkhvakelslkrflPkqllds
                   l++AaL  q+e+Gd  ++++  +++++ ++   +    l+rf P +++  
    KIAA1200  1173 LEMAALMAQVEYGDLEKPALPGpggtSPAKAQHLLQQVLDRFHPRRYRHG 1222 

                   ikasflqiqltlkewrerIvelhkehaglspeeaklkYLelarrLpptYG
                     a+      +l ++ +++  ++  + g sp e+ + YL +ar++p  +G
    KIAA1200  1223 APAE------QLRHLADMLTTKWATLQGCSPPECIRIYLTVARKWP-FFG 1265 

                   velF<-*
                   + lF   
    KIAA1200  1266 AKLF    1269 

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