hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20083538/chunk_1/iprscan-20080501-20083538.nocrc
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Query sequence: KIAA1200
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                      113.2    5.2e-34   2
PF00169.19.ls PH domain                                      117.2    4.3e-32   2
PF00784.8.fs MyTH4 domain                                    79.2    4.9e-22   1
PF00784.8.ls MyTH4 domain                                    81.1    3.2e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.ls   1/2     618   711 ..     1    92 []    89.3  1.1e-23
PF00169.19.fs   1/2     618   711 ..     1    92 []    87.3    4e-26
PF00169.19.fs   2/2     727   835 ..     1    92 []    25.9    2e-07
PF00169.19.ls   2/2     727   835 ..     1    92 []    27.9  3.3e-05
PF00784.8.fs   1/1     913  1025 ..     1   122 []    79.2  4.9e-22
PF00784.8.ls   1/1     913  1025 ..     1   122 []    81.1  3.2e-21

Alignments of top-scoring domains:
PF00169.19.ls: domain 1 of 2, from 618 to 711: score 89.3, E = 1.1e-23
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk...kkpkgsip
                      ++k+G+Llk+g++ k+wk+R+fvL++++++yyk++++   kp+g ++
    KIAA1200   618    LEKSGYLLKMGsQVKTWKRRWFVLRQGQIMYYKSPSdviRKPQGQVD 664  

                   Lsgi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsai
                   L++  q+++ +      +F+++++ + t++l a+s+  ++eW++ +qs++
    KIAA1200   665 LNSRcQIVRGEG---SQTFQLISeKK-TYYLTADSPSLLEEWIRVLQSLL 710  

                   r<-*
                   +   
    KIAA1200   711 K    711  

PF00169.19.fs: domain 1 of 2, from 618 to 711: score 87.3, E = 4e-26
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk...kkpkgsip
                      ++k+G+Llk+g++ k+wk+R+fvL++++++yyk++++   kp+g ++
    KIAA1200   618    LEKSGYLLKMGsQVKTWKRRWFVLRQGQIMYYKSPSdviRKPQGQVD 664  

                   Lsgi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsai
                   L++  q+++ +      +F+++++ + t++l a+s+  ++eW++ +qs++
    KIAA1200   665 LNSRcQIVRGEG---SQTFQLISeKK-TYYLTADSPSLLEEWIRVLQSLL 710  

                   r<-*
                   +   
    KIAA1200   711 K    711  

PF00169.19.fs: domain 2 of 2, from 727 to 835: score 25.9, E = 2e-07
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk.kkpkgsipLsg
                      ++ +GwL+k +  +  k +++ L ++ ++yy++  +k+p g++p+++
    KIAA1200   727    PTVKGWLTKVK-HGHSKVVWCALVGKIFYYYRSHEdKRPLGCLPVRD 772  

                   iqvtkvpdn................krkncFeirt.dretlllqaeseee
                   + +++v+++ +++++ + +++++    +++++i+ +++   +l   ++ e
    KIAA1200   773 AHIEEVDRScdsdedyeaggtrrllSSHCTLVIHPtEHSPTYLLIGTKHE 822  

                   rkeWvkaiqsair<-*
                   + +W+ ++  a+    
    KIAA1200   823 KDTWLYHLTVAAG    835  

PF00169.19.ls: domain 2 of 2, from 727 to 835: score 27.9, E = 3.3e-05
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk.kkpkgsipLsg
                      ++ +GwL+k +  +  k +++ L ++ ++yy++  +k+p g++p+++
    KIAA1200   727    PTVKGWLTKVK-HGHSKVVWCALVGKIFYYYRSHEdKRPLGCLPVRD 772  

                   iqvtkvpdn................krkncFeirt.dretlllqaeseee
                   + +++v+++ +++++ + +++++    +++++i+ +++   +l   ++ e
    KIAA1200   773 AHIEEVDRScdsdedyeaggtrrllSSHCTLVIHPtEHSPTYLLIGTKHE 822  

                   rkeWvkaiqsair<-*
                   + +W+ ++  a+    
    KIAA1200   823 KDTWLYHLTVAAG    835  

PF00784.8.fs: domain 1 of 1, from 913 to 1025: score 79.2, E = 4.9e-22
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                      ++   l+q  l+ ++  peL  EiYCQ+ KQ++  P   k+S+   W
    KIAA1200   913    DYHVSLAQTALQVCLVHPELQSEIYCQLMKQTSCRPP-QKYSLMQCW 958  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk
                   +Ll lc+ +F+P   +l y++ q l+r a+   + +e  +ya +cq++ +
    KIAA1200   959 QLLALCAPLFLPQHHFLWYVK-QQLQRHAD---PRSETGQYATYCQRAVE 1004 

                   iYktqknGYqsRkypPsrlEieAik<-*
                     +t + G   R+  Psr E+ +i+   
    KIAA1200  1005 --RTLRTG--EREARPSRMEVVSIL    1025 

PF00784.8.ls: domain 1 of 1, from 913 to 1025: score 81.1, E = 3.2e-21
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                      ++   l+q  l+ ++  peL  EiYCQ+ KQ++  P   k+S+   W
    KIAA1200   913    DYHVSLAQTALQVCLVHPELQSEIYCQLMKQTSCRPP-QKYSLMQCW 958  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk
                   +Ll lc+ +F+P   +l y++ q l+r a+   + +e  +ya +cq++ +
    KIAA1200   959 QLLALCAPLFLPQHHFLWYVK-QQLQRHAD---PRSETGQYATYCQRAVE 1004 

                   iYktqknGYqsRkypPsrlEieAik<-*
                     +t + G   R+  Psr E+ +i+   
    KIAA1200  1005 --RTLRTG--EREARPSRMEVVSIL    1025 

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