hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20052115/chunk_1/iprscan-20080501-20052115.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1198
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 335.8    2.9e-96  13
SM00349                                                  56.4    3.8e-12   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      81   135 ..     1    62 []    56.4  3.8e-12
SM00355      1/13    180   202 ..     1    23 []    25.6   0.0071
SM00355      2/13    218   240 ..     1    23 []    27.4   0.0019
SM00355      3/13    246   268 ..     1    23 []    26.4    0.004
SM00355      4/13    274   296 ..     1    23 []    28.7  0.00078
SM00355      5/13    302   324 ..     1    23 []    23.3    0.034
SM00355      6/13    330   352 ..     1    23 []    25.6    0.007
SM00355      7/13    358   380 ..     1    23 []    28.7  0.00078
SM00355      8/13    386   408 ..     1    23 []    24.9    0.011
SM00355      9/13    414   436 ..     1    23 []    30.1  0.00031
SM00355     10/13    442   464 ..     1    23 []    23.8    0.024
SM00355     11/13    470   492 ..     1    23 []    26.4    0.004
SM00355     12/13    498   520 ..     1    23 []    20.6     0.22
SM00355     13/13    526   548 ..     1    23 []    24.3    0.017

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 81 to 135: score 56.4, E = 3.8e-12
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                       ++eDVAV F+ EEW +LDp Qrn YRdVM+ +++nL+  G  + + 
    KIAA1198    81    ISLEDVAVNFTLEEWALLDPGQRNIYRDVMRATFKNLACIG-EKWK- 125  

                   pdliskLEqgeEpwi<-*
                         +  ++E  +   
    KIAA1198   126 -----DQDIEDEHKN    135  

SM00355: domain 1 of 13, from 180 to 202: score 25.6, E = 0.0071
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ Cg++f ++ +L+rHmr+H   
    KIAA1198   180    CDCSV-CGEVFMHQvSLNRHMRSH    202  

SM00355: domain 2 of 13, from 218 to 240: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk+f++ ++ + H r+H   
    KIAA1198   218    HKCKE-CGKTFTRSsSIRTHERIH    240  

SM00355: domain 3 of 13, from 246 to 268: score 26.4, E = 0.004
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f    ++++H+r+H   
    KIAA1198   246    YECKE-CGKAFAFLfSFRNHIRIH    268  

SM00355: domain 4 of 13, from 274 to 296: score 28.7, E = 0.00078
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  +aL+rH + H   
    KIAA1198   274    YECKE-CGKAFRYLtALRRHEKNH    296  

SM00355: domain 5 of 13, from 302 to 324: score 23.3, E = 0.034
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f  ++ +  H r+H   
    KIAA1198   302    YKCKQ-CGKAFIYYqPFLTHERTH    324  

SM00355: domain 6 of 13, from 330 to 352: score 25.6, E = 0.007
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs ++ L+ H ++H   
    KIAA1198   330    YECKQ-CGKAFSCPtYLRSHEKTH    352  

SM00355: domain 7 of 13, from 358 to 380: score 28.7, E = 0.00078
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cg+ f s+++L++H+++H   
    KIAA1198   358    FVCRE-CGRAFFSHsSLRKHVKTH    380  

SM00355: domain 8 of 13, from 386 to 408: score 24.9, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f+s ++ + H r+H   
    KIAA1198   386    YTCKK-CGEAFKSSsSCEVHERTH    408  

SM00355: domain 9 of 13, from 414 to 436: score 30.1, E = 0.00031
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+s + L+ H rvH   
    KIAA1198   414    YECKQ-CGKAFNSSsYLQLHERVH    436  

SM00355: domain 10 of 13, from 442 to 464: score 23.8, E = 0.024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f   ++++ H r+H   
    KIAA1198   442    YECKE-CGKAFLYStHFRIHERTH    464  

SM00355: domain 11 of 13, from 470 to 492: score 26.4, E = 0.004
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg++f   ++L+rH r+H   
    KIAA1198   470    YECKQ-CGRVFIYFsHLRRHERSH    492  

SM00355: domain 12 of 13, from 498 to 520: score 20.6, E = 0.22
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C++ Cgk f+  ++Lk H r+H   
    KIAA1198   498    CECKQ-CGKAFTCLnSLKVHKRIH    520  

SM00355: domain 13 of 13, from 526 to 548: score 24.3, E = 0.017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgk fs  ++L  H r+H   
    KIAA1198   526    FQCRQ-CGKAFSYSkSLHVHERTH    548  

//