hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20052115/chunk_1/iprscan-20080501-20052115.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1198 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 368.3 1.2e-107 13 PF00096.16.fs Zinc finger, C2H2 type 342.7 5.8e-100 13 PF01352.17.fs KRAB box 77.0 3.3e-21 1 PF01352.17.ls KRAB box 79.0 1.4e-20 1 PF01096.9.fs Transcription factor S-II (TFIIS) 61.3 2.7e-18 12 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 39.5 7e-12 7 PF01286.9.fs XPA protein N-terminal 39.2 2e-10 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 81 121 .. 1 41 [] 77.0 3.3e-21 PF01352.17.ls 1/1 81 121 .. 1 41 [] 79.0 1.4e-20 PF00096.16.ls 1/13 180 202 .. 1 24 [] 27.0 6.2e-05 PF00096.16.fs 1/13 180 202 .. 1 24 [] 25.0 5.5e-05 PF00096.16.fs 2/13 218 240 .. 1 24 [] 29.8 3.5e-06 PF00096.16.ls 2/13 218 240 .. 1 24 [] 31.8 2.2e-06 PF00096.16.fs 3/13 246 268 .. 1 24 [] 28.7 6.5e-06 PF00096.16.ls 3/13 246 268 .. 1 24 [] 30.7 4.7e-06 PF00096.16.fs 4/13 274 296 .. 1 24 [] 30.9 1.9e-06 PF00096.16.ls 4/13 274 296 .. 1 24 [] 32.8 1.1e-06 PF00096.16.ls 5/13 302 324 .. 1 24 [] 23.6 0.00064 PF00096.16.ls 6/13 330 352 .. 1 24 [] 25.9 0.00014 PF00096.16.fs 6/13 330 352 .. 1 24 [] 23.9 0.00011 PF00096.16.fs 7/13 358 380 .. 1 24 [] 28.3 8.6e-06 PF00096.16.ls 7/13 358 380 .. 1 24 [] 30.2 6.6e-06 PF00096.16.ls 8/13 386 408 .. 1 24 [] 24.9 0.00026 PF00096.16.fs 8/13 386 408 .. 1 24 [] 22.9 0.00018 PF00096.16.ls 9/13 414 436 .. 1 24 [] 34.0 4.7e-07 PF00096.16.fs 9/13 414 436 .. 1 24 [] 32.1 9.7e-07 PF00096.16.ls 10/13 442 464 .. 1 24 [] 27.6 4.1e-05 PF00096.16.fs 10/13 442 464 .. 1 24 [] 25.6 3.9e-05 PF00096.16.fs 11/13 470 492 .. 1 24 [] 28.2 9.1e-06 PF00096.16.ls 11/13 470 492 .. 1 24 [] 30.1 7.1e-06 PF00096.16.ls 12/13 498 520 .. 1 24 [] 19.7 0.0095 PF00096.16.ls 13/13 526 548 .. 1 24 [] 29.8 8.8e-06 PF00096.16.fs 13/13 526 548 .. 1 24 [] 27.9 1.1e-05 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 81 to 121: score 77.0, E = 3.3e-21 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* ++ eDVaV+Ft EEW+lLdp Qrn YrdVM+ +++nL+++g KIAA1198 81 ISLEDVAVNFTLEEWALLDPGQRNIYRDVMRATFKNLACIG 121 PF01352.17.ls: domain 1 of 1, from 81 to 121: score 79.0, E = 1.4e-20 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* ++ eDVaV+Ft EEW+lLdp Qrn YrdVM+ +++nL+++g KIAA1198 81 ISLEDVAVNFTLEEWALLDPGQRNIYRDVMRATFKNLACIG 121 PF00096.16.ls: domain 1 of 13, from 180 to 202: score 27.0, E = 6.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg++F ++ +L+rH+r+H KIAA1198 180 CDCS-VCGEVFMHQVSLNRHMRSH 202 PF00096.16.fs: domain 1 of 13, from 180 to 202: score 25.0, E = 5.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg++F ++ +L+rH+r+H KIAA1198 180 CDCS-VCGEVFMHQVSLNRHMRSH 202 PF00096.16.fs: domain 2 of 13, from 218 to 240: score 29.8, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r+s+ ++H r+H KIAA1198 218 HKCK-ECGKTFTRSSSIRTHERIH 240 PF00096.16.ls: domain 2 of 13, from 218 to 240: score 31.8, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r+s+ ++H r+H KIAA1198 218 HKCK-ECGKTFTRSSSIRTHERIH 240 PF00096.16.fs: domain 3 of 13, from 246 to 268: score 28.7, E = 6.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++++H+r+H KIAA1198 246 YECK-ECGKAFAFLFSFRNHIRIH 268 PF00096.16.ls: domain 3 of 13, from 246 to 268: score 30.7, E = 4.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++++H+r+H KIAA1198 246 YECK-ECGKAFAFLFSFRNHIRIH 268 PF00096.16.fs: domain 4 of 13, from 274 to 296: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ L+rH + H KIAA1198 274 YECK-ECGKAFRYLTALRRHEKNH 296 PF00096.16.ls: domain 4 of 13, from 274 to 296: score 32.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ L+rH + H KIAA1198 274 YECK-ECGKAFRYLTALRRHEKNH 296 PF00096.16.ls: domain 5 of 13, from 302 to 324: score 23.6, E = 0.00064 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + +H rtH KIAA1198 302 YKCK-QCGKAFIYYQPFLTHERTH 324 PF00096.16.ls: domain 6 of 13, from 330 to 352: score 25.9, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs + L++H +tH KIAA1198 330 YECK-QCGKAFSCPTYLRSHEKTH 352 PF00096.16.fs: domain 6 of 13, from 330 to 352: score 23.9, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs + L++H +tH KIAA1198 330 YECK-QCGKAFSCPTYLRSHEKTH 352 PF00096.16.fs: domain 7 of 13, from 358 to 380: score 28.3, E = 8.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg++F ++s+L++H +tH KIAA1198 358 FVCR-ECGRAFFSHSSLRKHVKTH 380 PF00096.16.ls: domain 7 of 13, from 358 to 380: score 30.2, E = 6.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg++F ++s+L++H +tH KIAA1198 358 FVCR-ECGRAFFSHSSLRKHVKTH 380 PF00096.16.ls: domain 8 of 13, from 386 to 408: score 24.9, E = 0.00026 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+++s+ + H rtH KIAA1198 386 YTCK-KCGEAFKSSSSCEVHERTH 408 PF00096.16.fs: domain 8 of 13, from 386 to 408: score 22.9, E = 0.00018 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+++s+ + H rtH KIAA1198 386 YTCK-KCGEAFKSSSSCEVHERTH 408 PF00096.16.ls: domain 9 of 13, from 414 to 436: score 34.0, E = 4.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s L+ H r+H KIAA1198 414 YECK-QCGKAFNSSSYLQLHERVH 436 PF00096.16.fs: domain 9 of 13, from 414 to 436: score 32.1, E = 9.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s L+ H r+H KIAA1198 414 YECK-QCGKAFNSSSYLQLHERVH 436 PF00096.16.ls: domain 10 of 13, from 442 to 464: score 27.6, E = 4.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + +++ H rtH KIAA1198 442 YECK-ECGKAFLYSTHFRIHERTH 464 PF00096.16.fs: domain 10 of 13, from 442 to 464: score 25.6, E = 3.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + +++ H rtH KIAA1198 442 YECK-ECGKAFLYSTHFRIHERTH 464 PF00096.16.fs: domain 11 of 13, from 470 to 492: score 28.2, E = 9.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F s+L+rH r+H KIAA1198 470 YECK-QCGRVFIYFSHLRRHERSH 492 PF00096.16.ls: domain 11 of 13, from 470 to 492: score 30.1, E = 7.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F s+L+rH r+H KIAA1198 470 YECK-QCGRVFIYFSHLRRHERSH 492 PF00096.16.ls: domain 12 of 13, from 498 to 520: score 19.7, E = 0.0095 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+ +Lk H+r+H KIAA1198 498 CECK-QCGKAFTCLNSLKVHKRIH 520 PF00096.16.ls: domain 13 of 13, from 526 to 548: score 29.8, E = 8.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+Fs +++L+ H rtH KIAA1198 526 FQCR-QCGKAFSYSKSLHVHERTH 548 PF00096.16.fs: domain 13 of 13, from 526 to 548: score 27.9, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+Fs +++L+ H rtH KIAA1198 526 FQCR-QCGKAFSYSKSLHVHERTH 548 //