# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg01776.fasta.huge -Q ../query/KIAA1196.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1196, 851 aa
 vs ./tmplib.24314 library

1986654 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.6567+/-0.00968; mu= 9.2349+/- 0.660
 mean_var=417.8127+/-103.224, 0's: 0 Z-trim: 6  B-trim: 106 in 1/39
 Lambda= 0.062746

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1805  ( 534 res)   fk00014                     ( 534) 1271 129.5 9.7e-31


>>KIAA1805  ( 534 res)   fk00014                          (534 aa)
 initn: 1068 init1: 626 opt: 1271  Z-score: 643.8  bits: 129.5 E(): 9.7e-31
Smith-Waterman score: 1271;  41.478% identity (67.351% similar) in 487 aa overlap (342-820:6-482)

             320       330       340       350       360       370 
KIAA11 CPIPPKQARPENGEYGPSSMGQSSAFQLSADTSSGSLSPGSRPSGGMEALKAAGPASPPE
                                     :.:     : .   .:  . ..  :.:   
KIAA18                          QCSIKDNSFQYTIPHDDSLSGSSSASSCEPVSDFP
                                        10        20        30     

             380       390       400          410       420        
KIAA11 EDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLVKA---EDKARVHRSKKQEGPGPEDA
        . ... .  :..  :  .  .   ::  . ::  :    ::.   .  .:..    .  
KIAA18 ASFRKSTYWMKMRRIKPAATSHVEGSGGVSAKGKRKPRQEEDEDYREFPQKKHKLYGRKQ
          40        50        60        70        80        90     

      430           440       450       460       470       480    
KIAA11 RKKVPAAPIT----VSKEAPAPVAHPAPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVG
       : :.   : .    . :: :. .:    :. ::::   : ..: . ::::..: :::. :
KIAA18 RPKTQPNPKSQARRIRKEPPVYAA----GSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEG
         100       110           120       130       140       150 

          490       500       510       520       530       540    
KIAA11 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGEQEERERLR
       :::::: :.  :. . :.:: ::..: ::..::.::.:.. :    ..:  :  ::::::
KIAA18 LKKHMENCK--QEMFTCHHCGKQLRSLAGMKYHVMANHNSLPILKAGDEIDEPSERERLR
             160         170       180       190       200         

          550       560       570       580       590       600    
KIAA11 KVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGH
        :::..:.::: .:.:...:.:.::: :: :.:::   :... .. : :::: :::::: 
KIAA18 TVLKRLGKLRCMRESCSSSFTSIMGYLYHVRKCGKGAAELEKMTLKCHHCGKPYRSKAGL
     210       220       230       240       250       260         

          610       620       630       640       650       660    
KIAA11 DYHVRSEHTAPPPEEPTDKSPEAEDPLGVERTPSGRVRRTSAQVAVFHLQEIAEDELARD
        ::.:::: .:    : . .::    ...:   .:::.: ::..::.::::.:  :::..
KIAA18 AYHLRSEH-GPISFFPESGQPECLKEMNLESKSGGRVQRRSAKIAVYHLQELASAELAKE
     270        280       290       300       310       320        

          670       680       690       700       710       720    
KIAA11 WTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYSSVS
       : ::.. .::::.  .:.::::::::.. ..:. ::...:.  ...:::. :::.:::::
KIAA18 WPKRKVLQDLVPDDRKLKYTRPGLPTFSQEVLHKWKTDIKKYHRIQCPNQGCEAVYSSVS
      330       340       350       360       370       380        

          730       740       750       760       770       780    
KIAA11 GLKAHLASCSKGAHLAGKYRCLLCPKEFSSESGVKYHILKTHAENWFRTSADPPPKHRSQ
       ::::::.::. :  .::::.:::: ::: ::::::::: ..:::.:: ..   :   .: 
KIAA18 GLKAHLGSCTLGNFVAGKYKCLLCQKEFVSESGVKYHINSVHAEDWFVVN---PTTTKSF
      390       400       410       420       430          440     

          790       800        810       820       830       840   
KIAA11 DSLVPKKEKKKNLAGGKKRGRKPKE-RTPEEPVAKLPPRRDDWPPGCRDKGARGSTGRKV
       ..:.  :.....    ... :. .  :  ..:  .::                       
KIAA18 EKLMKIKQRQQEEEKRRQQHRSRRSLRRRQQPGIELPETELSLRVGKDQRRNNEELVVSA
         450       460       470       480       490       500     

           850                      
KIAA11 GVSKAPEK                     
                                    
KIAA18 SCKEPEQEPVPAQFQKVKPPKTNHKRGRK
         510       520       530    




851 residues in 1 query   sequences
1986654 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:40 2008 done: Thu Dec 18 15:12:40 2008
 Total Scan time:  0.610 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]