# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hh01795a.fasta.nr -Q ../query/KIAA1191.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1191, 100 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827343 sequences Expectation_n fit: rho(ln(x))= 5.3221+/-0.000181; mu= 3.9214+/- 0.010 mean_var=67.2771+/-13.035, 0's: 37 Z-trim: 37 B-trim: 0 in 0/66 Lambda= 0.156365 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10437014|dbj|BAB14957.1| unnamed protein produc ( 305) 682 161.8 4.6e-38 gi|21739162|emb|CAB99231.1| hypothetical protein [ ( 286) 671 159.3 2.4e-37 gi|55730970|emb|CAH92202.1| hypothetical protein [ ( 305) 666 158.2 5.6e-37 gi|109079827|ref|XP_001083749.1| PREDICTED: hypoth ( 305) 651 154.8 5.9e-36 gi|73953346|ref|XP_866160.1| PREDICTED: hypothetic ( 286) 614 146.5 1.8e-33 gi|73953348|ref|XP_852699.1| PREDICTED: hypothetic ( 305) 614 146.5 1.9e-33 gi|119590312|gb|EAW69906.1| hCG1644400 [Homo sapie ( 200) 589 140.7 6.7e-32 gi|109020121|ref|XP_001083437.1| PREDICTED: hypoth ( 190) 542 130.1 1e-28 gi|149039939|gb|EDL94055.1| hypothetical LOC306766 ( 96) 524 125.9 9.4e-28 gi|149039937|gb|EDL94053.1| hypothetical LOC306766 ( 198) 526 126.5 1.3e-27 gi|33086504|gb|AAP92564.1| Aa2-141 [Rattus norvegi ( 265) 526 126.6 1.6e-27 gi|149039932|gb|EDL94048.1| hypothetical LOC306766 ( 284) 526 126.6 1.7e-27 gi|26380862|dbj|BAC25449.1| unnamed protein produc ( 236) 515 124.1 8.1e-27 gi|148709195|gb|EDL41141.1| RIKEN cDNA 4833439L19, ( 284) 515 124.1 9.5e-27 gi|148709197|gb|EDL41143.1| RIKEN cDNA 4833439L19, ( 288) 515 124.1 9.6e-27 gi|148709194|gb|EDL41140.1| RIKEN cDNA 4833439L19, ( 291) 515 124.1 9.7e-27 gi|74198368|dbj|BAE39669.1| unnamed protein produc ( 303) 515 124.2 1e-26 gi|74202965|dbj|BAE26191.1| unnamed protein produc ( 303) 515 124.2 1e-26 gi|148709196|gb|EDL41142.1| RIKEN cDNA 4833439L19, ( 353) 515 124.2 1.1e-26 gi|126304516|ref|XP_001362104.1| PREDICTED: simila ( 308) 511 123.3 1.9e-26 gi|170284477|gb|AAI60985.1| LOC100145417 protein [ ( 300) 424 103.6 1.5e-20 gi|49900536|gb|AAH76030.1| LOC553220 protein [Dani ( 345) 368 91.0 1.1e-16 gi|47206497|emb|CAF95797.1| unnamed protein produc ( 309) 295 74.5 8.9e-12 gi|47214348|emb|CAG01193.1| unnamed protein produc ( 324) 262 67.1 1.6e-09 >>gi|10437014|dbj|BAB14957.1| unnamed protein product [H (305 aa) initn: 682 init1: 682 opt: 682 Z-score: 839.6 bits: 161.8 E(): 4.6e-38 Smith-Waterman score: 682; 100.000% identity (100.000% similar) in 100 aa overlap (1-100:206-305) 10 20 30 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYD :::::::::::::::::::::::::::::: gi|104 PSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYD 180 190 200 210 220 230 40 50 60 70 80 90 KIAA11 SGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 SGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR 240 250 260 270 280 290 100 KIAA11 DLNVLTPTGF :::::::::: gi|104 DLNVLTPTGF 300 >>gi|21739162|emb|CAB99231.1| hypothetical protein [Homo (286 aa) initn: 671 init1: 671 opt: 671 Z-score: 826.6 bits: 159.3 E(): 2.4e-37 Smith-Waterman score: 671; 99.000% identity (99.000% similar) in 100 aa overlap (1-100:187-286) 10 20 30 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYD :::::::::::::::::::::::::::::: gi|217 PSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYD 160 170 180 190 200 210 40 50 60 70 80 90 KIAA11 SGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|217 SGSFATQAYRGAQKSSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR 220 230 240 250 260 270 100 KIAA11 DLNVLTPTGF :::::::::: gi|217 DLNVLTPTGF 280 >>gi|55730970|emb|CAH92202.1| hypothetical protein [Pong (305 aa) initn: 666 init1: 666 opt: 666 Z-score: 820.1 bits: 158.2 E(): 5.6e-37 Smith-Waterman score: 666; 98.000% identity (99.000% similar) in 100 aa overlap (1-100:206-305) 10 20 30 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYD :::::::::::::::::::::::::::::: gi|557 PSTTPHSSPKQRSRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYD 180 190 200 210 220 230 40 50 60 70 80 90 KIAA11 SGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR ::: :::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SGSSATQAYRGVQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR 240 250 260 270 280 290 100 KIAA11 DLNVLTPTGF :::::::::: gi|557 DLNVLTPTGF 300 >>gi|109079827|ref|XP_001083749.1| PREDICTED: hypothetic (305 aa) initn: 651 init1: 651 opt: 651 Z-score: 801.8 bits: 154.8 E(): 5.9e-36 Smith-Waterman score: 651; 95.000% identity (99.000% similar) in 100 aa overlap (1-100:206-305) 10 20 30 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYD :::::::::::::::::::::::::::::: gi|109 PSTSPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYD 180 190 200 210 220 230 40 50 60 70 80 90 KIAA11 SGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR ::::::::::::::::::::::::.:.:::.:::::::::::::.:::: :::::::::: gi|109 SGSFATQAYRGAQKPSPLELIRAQTNQMAEEPAALKPPKMDIPVVEGKKPPPRAHNLKPR 240 250 260 270 280 290 100 KIAA11 DLNVLTPTGF :::::::::: gi|109 DLNVLTPTGF 300 >>gi|73953346|ref|XP_866160.1| PREDICTED: hypothetical p (286 aa) initn: 614 init1: 614 opt: 614 Z-score: 757.1 bits: 146.5 E(): 1.8e-33 Smith-Waterman score: 614; 88.000% identity (98.000% similar) in 100 aa overlap (1-100:187-286) 10 20 30 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYD :::::.::::::::.::::::::::::: : gi|739 PSSSPHSSPKQKSRGWFASGSSTALPGPNPSTMDSASGDKDRNLADKWSLFGPRSLQKSD 160 170 180 190 200 210 40 50 60 70 80 90 KIAA11 SGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR ::.::::.:::::::::.::::.::.:::::::..:::::::::::::: :::.:::::: gi|739 SGGFATQTYRGAQKPSPMELIRVQATRMAEDPATFKPPKMDIPVMEGKKPPPRTHNLKPR 220 230 240 250 260 270 100 KIAA11 DLNVLTPTGF :::::::::: gi|739 DLNVLTPTGF 280 >>gi|73953348|ref|XP_852699.1| PREDICTED: hypothetical p (305 aa) initn: 614 init1: 614 opt: 614 Z-score: 756.7 bits: 146.5 E(): 1.9e-33 Smith-Waterman score: 614; 88.000% identity (98.000% similar) in 100 aa overlap (1-100:206-305) 10 20 30 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYD :::::.::::::::.::::::::::::: : gi|739 PSSSPHSSPKQKSRGWFASGSSTALPGPNPSTMDSASGDKDRNLADKWSLFGPRSLQKSD 180 190 200 210 220 230 40 50 60 70 80 90 KIAA11 SGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR ::.::::.:::::::::.::::.::.:::::::..:::::::::::::: :::.:::::: gi|739 SGGFATQTYRGAQKPSPMELIRVQATRMAEDPATFKPPKMDIPVMEGKKPPPRTHNLKPR 240 250 260 270 280 290 100 KIAA11 DLNVLTPTGF :::::::::: gi|739 DLNVLTPTGF 300 >>gi|119590312|gb|EAW69906.1| hCG1644400 [Homo sapiens] (200 aa) initn: 589 init1: 589 opt: 589 Z-score: 728.9 bits: 140.7 E(): 6.7e-32 Smith-Waterman score: 589; 87.000% identity (96.000% similar) in 100 aa overlap (1-100:101-200) 10 20 30 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYD :::::::::::::::::::::::::::: : gi|119 PSCTPHSSPEQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKDD 80 90 100 110 120 130 40 50 60 70 80 90 KIAA11 SGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR :::::::::.:::::::.:::.::::.:..::: :::::::::::::.:: ::.:.::: gi|119 SGSFATQAYQGAQKPSPVELIHAQANHMTRDPANLKPPKMDIPVMEGNKQLPRTHHLKPG 140 150 160 170 180 190 100 KIAA11 DLNVLTPTGF :::::::::: gi|119 DLNVLTPTGF 200 >>gi|109020121|ref|XP_001083437.1| PREDICTED: hypothetic (190 aa) initn: 542 init1: 542 opt: 542 Z-score: 672.0 bits: 130.1 E(): 1e-28 Smith-Waterman score: 542; 81.633% identity (93.878% similar) in 98 aa overlap (3-100:1-98) 10 20 30 40 50 60 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLELIRAQANRMAE :::::::::::::::::::::::::: ::.::::::::::.::::.::::::.:.:.. gi|109 MDSGSGDKDRNLSDKWSLFGPRSLQKDDSASFATQAYRGAHKPSPVELIRAQTNHMTR 10 20 30 40 50 70 80 90 100 KIAA11 DPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVLTPTGF :::.:::::::::: ::. : ..:.::: :::::::::: gi|109 DPATLKPPKMDIPVTEGNTQLTQTHHLKPGDLNVLTPTGFWSAFSSSPLKTYGLNAQGSP 60 70 80 90 100 110 gi|109 VNRGSPDAEDCREHLAERREGAEANRKKEKGPRAESTDLSRHKKSKATPTHHKKSESRRE 120 130 140 150 160 170 >>gi|149039939|gb|EDL94055.1| hypothetical LOC306766, is (96 aa) initn: 509 init1: 388 opt: 524 Z-score: 654.5 bits: 125.9 E(): 9.4e-28 Smith-Waterman score: 524; 76.531% identity (90.816% similar) in 98 aa overlap (3-100:1-96) 10 20 30 40 50 60 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLELIRAQANRMAE :: :.:. ::: .::::::::: ::: ::: :: :::.:: ::::.:..::::.: .: gi|149 MDPGGGN-DRNSADKWSLFGPRPLQKSDSG-FAIQAYKGAPKPSPMEVMRAQATRAGE 10 20 30 40 50 70 80 90 100 KIAA11 DPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVLTPTGF :::..::::::.::.::::::::.:::::::::::::::: gi|149 DPAVFKPPKMDVPVVEGKKQPPRTHNLKPRDLNVLTPTGF 60 70 80 90 >>gi|149039937|gb|EDL94053.1| hypothetical LOC306766, is (198 aa) initn: 509 init1: 388 opt: 526 Z-score: 652.2 bits: 126.5 E(): 1.3e-27 Smith-Waterman score: 526; 75.758% identity (90.909% similar) in 99 aa overlap (2-100:102-198) 10 20 30 KIAA11 STMDSGSGDKDRNLSDKWSLFGPRSLQKYDS .:: :.:. ::: .::::::::: ::: :: gi|149 SSTPHSSPKQKSRGWFPSGSSTALPAPNPHSMDPGGGN-DRNSADKWSLFGPRPLQKSDS 80 90 100 110 120 130 40 50 60 70 80 90 KIAA11 GSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRD : :: :::.:: ::::.:..::::.: .::::..::::::.::.::::::::.::::::: gi|149 G-FAIQAYKGAPKPSPMEVMRAQATRAGEDPAVFKPPKMDVPVVEGKKQPPRTHNLKPRD 140 150 160 170 180 100 KIAA11 LNVLTPTGF ::::::::: gi|149 LNVLTPTGF 190 100 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 01:48:34 2009 done: Wed Mar 4 01:55:41 2009 Total Scan time: 1005.610 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]