hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19522325/chunk_1/iprscan-20080501-19522325.nocrc
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Query sequence: KIAA1190
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  96.2    3.9e-24   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/4       3    25 ..     1    23 []    26.3   0.0041
SM00355      2/4      31    53 ..     1    23 []    27.2   0.0022
SM00355      3/4      59    81 ..     1    23 []    35.4  7.7e-06
SM00355      4/4      87   114 ..     1    23 []     7.2       49

Alignments of top-scoring domains:
SM00355: domain 1 of 4, from 3 to 25: score 26.3, E = 0.0041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  C+++f  k +L+ Hm +H   
    KIAA1190     3    FRCEN-CNERFQYKyQLRSHMSIH    25   

SM00355: domain 2 of 4, from 31 to 53: score 27.2, E = 0.0022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk f+ k+ + +Hm++H   
    KIAA1190    31    FMCQW-CGKDFNMKqYFDEHMKTH    53   

SM00355: domain 3 of 4, from 59 to 81: score 35.4, E = 7.7e-06
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+i Cgksf+s++++krH r+H   
    KIAA1190    59    YICEI-CGKSFTSRpNMKRHRRTH    81   

SM00355: domain 4 of 4, from 87 to 114: score 7.2, E = 49
                   *->ykCpigCgksfssk.aLkrHmr.....vH<-*
                      y C++ Cg++f+  + Lk H  +  + +H   
    KIAA1190    87    YPCDV-CGQRFRFSnMLKAHKEkcfrvSH    114  

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