# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk03027.fasta.huge -Q ../query/KIAA1187.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1187, 813 aa
 vs ./tmplib.24314 library

1986692 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 18.4300+/- 0.014; mu= -46.4433+/- 0.946
 mean_var=863.1527+/-206.776, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.043655

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0324  ( 2800 res)   ee08846s1                  (2800)  375 39.3  0.0069


>>KIAA0324  ( 2800 res)   ee08846s1                       (2800 aa)
 initn: 259 init1: 121 opt: 375  Z-score: 143.7  bits: 39.3 E(): 0.0069
Smith-Waterman score: 435;  24.660% identity (50.340% similar) in 588 aa overlap (2-561:369-936)

                                            10        20        30 
KIAA11                              DPETPSDAAAMESGPRAELGAGAPPAVVART
                                     : .:  :. . :.:  .         ..: 
KIAA03 LAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRP
      340       350       360       370       380       390        

              40        50        60        70        80        90 
KIAA11 PPEPRPSPEGDPSPPPPPMSALVPDTPPDTPPAMKNATSSKQLPLEPESPSGQVGPRPAP
        : :. :  : : :: :  . :. .    .:  . ..  :.. :..: : .. .  :  :
KIAA03 SPSPERSSTG-PEPPAP--TPLLAERHGGSPQPLATTPLSQE-PVNPPSEASPTRDRSPP
      400        410         420       430        440       450    

               100        110       120          130       140     
KIAA11 --PQEESPSSEAKSRGPTP-PAMGPRDARPPRRSSQPSP---TAVPASDSPPTKQEVKKA
         :..   :: ..:  :.: :.   : :    .: .:.:   .    :.:: .:.. .  
KIAA03 KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGR
          460       470       480       490       500       510    

            150       160       170         180       190          
KIAA11 GER---HKLAKERREERAKYLAAKKAVWLEKEEKAKA--LREKQLQERRRRLEEQ--RLK
       ..:   :. .  ::  :..  :. :    ...  .:    : .. : :: :  ..  : .
KIAA03 AKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSR
          520       530       540       550       560       570    

      200       210       220       230                240         
KIAA11 AEQRRAALEERQRQKLEKNKERYEAAIQRSVKK---------TWAEIRQQRWSWAGALHH
       . :::.  .  ::    ....  . . .::...         : .. :..  .  :  . 
KIAA03 SPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRS
          580       590       600       610       620       630    

     250       260       270       280       290       300         
KIAA11 SSPGHKTNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGCDPGRGPTW
        .:... .::   .  .:    :  ::.    .:::. .      :.  :  . .:.:. 
KIAA03 RTPARRRSRSRTPTRRRS----RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR
          640       650           660       670       680       690

     310       320       330        340       350       360        
KIAA11 GRAGASLARGPQPDRTHPSAAVPVC-PRSASASPLTPCSVTRSVHRCAPAGERGERRKPN
        :.: : .: :   : .  . .:.   :: : .:    . .::  :      :.. : : 
KIAA03 -RSGRSRSRTPA-RRGRSRSRTPARRGRSRSRTPARRSGRSRS--RTPARRGRSRSRTPR
               700        710       720       730         740      

      370          380       390       400       410       420     
KIAA11 AGGSPAP--VRR-RPEASPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASPRARLS
        : : .   ::: : ..   :.. .. .  : .:.::  ...::  . .: :   ..:.:
KIAA03 RGRSRSRSLVRRGRSHSRTPQRRGRSGSSSE-RKNKSRTSQRRS--RSNSSPEMKKSRIS
        750       760       770        780         790       800   

         430        440       450       460       470       480    
KIAA11 ASTASELS-PKSKARPSSPSTSWHRPASPCPSPGPGHTLPPKPPSPRGTTASPKGRVRRK
       .  .  :: :.:::.           .::::.       ::.    :. ... :.. :  
KIAA03 SRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQK--SQTPPR--RSRSGSSQTKAKSRTP
           810       820       830         840         850         

          490       500       510       520       530       540    
KIAA11 EEAKESPSAAGPEDKSQSKRRASNEKESAAPASPAPSPAPSPTPAPPQKEQPPAETPTDA
        . ..: :.  :..::..  : :. . :  :   . .:  . . . :: ..  . ::   
KIAA03 PRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSV-TPQRR
     860       870       880       890       900       910         

          550        560       570       580       590       600   
KIAA11 AVLTSPPAPA-PPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERRLQAERDKR
       . . : : :     :::.                                          
KIAA03 SCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSH
      920       930       940       950       960       970        




813 residues in 1 query   sequences
1986692 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:23 2008 done: Thu Dec 18 15:12:23 2008
 Total Scan time:  0.620 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]