# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pj00504.fasta.huge -Q ../query/KIAA1186.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1186, 405 aa
 vs ./tmplib.24314 library

1987100 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.1902+/-0.00383; mu= 16.7400+/- 0.261
 mean_var=74.7502+/-18.181, 0's: 0 Z-trim: 1  B-trim: 8 in 1/39
 Lambda= 0.148343

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0420  ( 756 res)   fg02987                     ( 756)  684 155.9 7.2e-39


>>KIAA0420  ( 756 res)   fg02987                          (756 aa)
 initn: 615 init1: 435 opt: 684  Z-score: 789.6  bits: 155.9 E(): 7.2e-39
Smith-Waterman score: 684;  33.884% identity (65.289% similar) in 363 aa overlap (7-355:295-640)

                                       10        20        30      
KIAA11                         ATMSGRVGDLSPRQKEALAKFRENVQDVLPALPNPD
                                     .: :.: :.  : ..:. .:..  .   : 
KIAA04 AHGPRSTLGPALEAVSMDGDKLDADYIERCLGHLTPMQESCLIQLRHWLQETHKG-KIPK
          270       280       290       300       310        320   

         40        50        60        70         80        90     
KIAA11 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII-SWQPPEVIQQYLSGGMCGYDL
       :  .::.:::..: :.:.. :::. . .:::...: .. .:::: ..... .::    :.
KIAA04 DEHILRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLLLQTWQPPALLEEFYAGGWHYQDI
           330       340       350       360       370       380   

         100       110       120       130       140       150     
KIAA11 DGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIY
       :: :..   .: .:.:::. ..... :::  .   :   ..:  .: .::: . . : . 
KIAA04 DGRPLYILRLGQMDTKGLMKAVGEEALLRHVLSVNEEGQKRCEGSTRQLGRPISSWTCLL
           390       400       410       420       430       440   

         160       170       180       190       200       210     
KIAA11 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDT
       : :::...:::.:.:.:  ... . :.:::::: ::..:.::..::: ..::.::..:.:
KIAA04 DLEGLNMRHLWRPGVKALLRMIEVVEDNYPETLGRLLIVRAPRVFPVLWTLISPFINENT
           450       460       470       480       490       500   

         220        230       240       250          260       270 
KIAA11 RKKIMVL-GANWKEVLLKHISPDQVPVEYGGTMTDPD---GNPKCKSKINYGGDIPRKYY
       :.:...  :.:..       .:  . :.:    . ::   :.  :  ..  :: .:.. :
KIAA04 RRKFLIYSGSNYQ-------GPGGL-VDYLDREVIPDFLGGESVC--NVPEGGLVPKSLY
           510              520        530       540         550   

                    280         290       300       310       320  
KIAA11 VR-------DQVKQQYE--HSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFL
       .        ::. :  :  ::... ::. :.:  :::    :. :.:    .:: :... 
KIAA04 MTEEEQEHTDQLWQWSETYHSASVLRGAPHEVAVEILEGESVITWDFDILRGDVVFSLY-
           560       570       580       590       600       610   

            330       340       350       360       370       380  
KIAA11 KTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFT
       .::.. :  : :     :. : ...:. .  .:                           
KIAA04 HTKQAPRLGARE-----PGTRASGQLIDKGWVLGRDYSRVEAPLVCREGESIQGSHVTRW
            620            630       640       650       660       

            390       400                                          
KIAA11 VEVLLPDKASEEKMKQLGAGTPK                                     
                                                                   
KIAA04 PGVYLLQWQMHSPPSSVACSLPGVDDVLTALHSPGPKCKLLYYCEVLASEDFRGSMSSLE
       670       680       690       700       710       720       




405 residues in 1 query   sequences
1987100 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:21 2008 done: Thu Dec 18 15:12:21 2008
 Total Scan time:  0.390 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]