hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19441658/chunk_1/iprscan-20080501-19441658.nocrc
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Query sequence: KIAA1185
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03483.7.fs B3/4 domain                                     20.5      1e-05   1
PF00560.23.fs Leucine Rich Repeat                             20.9    0.00012   2
PF00560.23.ls Leucine Rich Repeat                             24.6    0.00032   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.fs   1/2      23    44 ..     1    24 []    18.2  0.00063
PF00560.23.ls   1/2      23    44 ..     1    24 []    20.1   0.0076
PF03483.7.fs   1/1     258   325 ..    88   189 .]    20.5    1e-05

Alignments of top-scoring domains:
PF00560.23.fs: domain 1 of 2, from 23 to 44: score 18.2, E = 0.00063
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L++LdLs+ N +l+ ++p++l ++   
    KIAA1185    23    SLKTLDLSN-N-QLS-EIPAELaDC    44   

PF00560.23.ls: domain 1 of 2, from 23 to 44: score 20.1, E = 0.0076
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L++LdLs+ N +l+ ++p++l ++   
    KIAA1185    23    SLKTLDLSN-N-QLS-EIPAELaDC    44   

PF03483.7.fs: domain 1 of 1, from 258 to 325: score 20.5, E = 1e-05
                   *->klvtLDgkeereLdegdLVIaDdekpVlalAGvmGGeesevtenTkn
                      +l++LDg       e++++ +D+++ V++ +++ ++e ++v  +T +
    KIAA1185   258    YLHLLDGN------ENYPCLVDADGDVISFPPITNSEKTKVKKTTSD 298  

                   ifLEaAyFdPeaIrktsrrlgLrteaSyRFERGvDpalvekAldrAteLl
                    fLE++     a                      + ++ + ++d   +L+
    KIAA1185   299 LFLEVTS----A---------------------TSLQICKDVMD---ALI 320  

                   lelag<-*
                   l+ a    
    KIAA1185   321 LKMAE    325  

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