# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hh01688a.fasta.nr -Q ../query/KIAA1178.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1178, 124 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827146 sequences Expectation_n fit: rho(ln(x))= 4.9760+/-0.00018; mu= 7.1502+/- 0.010 mean_var=63.2234+/-12.245, 0's: 43 Z-trim: 44 B-trim: 0 in 0/67 Lambda= 0.161300 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|33337731|gb|AAQ13502.1|AF109192_1 FWP010 [Homo ( 190) 880 212.4 2.1e-53 gi|31339956|sp|O95400.1|CD2B2_HUMAN RecName: Full= ( 341) 880 212.6 3.4e-53 gi|109128203|ref|XP_001110388.1| PREDICTED: CD2 an ( 341) 856 207.0 1.6e-51 gi|55728994|emb|CAH91235.1| hypothetical protein [ ( 341) 852 206.1 3.1e-51 gi|55730034|emb|CAH91742.1| hypothetical protein [ ( 341) 852 206.1 3.1e-51 gi|90079185|dbj|BAE89272.1| unnamed protein produc ( 339) 843 204.0 1.3e-50 gi|74178565|dbj|BAE32530.1| unnamed protein produc ( 342) 804 194.9 7.2e-48 gi|31339987|sp|Q9CWK3.1|CD2B2_MOUSE RecName: Full= ( 342) 803 194.6 8.4e-48 gi|148685558|gb|EDL17505.1| mCG134114, isoform CRA ( 369) 803 194.7 9e-48 gi|149067756|gb|EDM17308.1| CD2 antigen (cytoplasm ( 340) 799 193.7 1.6e-47 gi|149725842|ref|XP_001501595.1| PREDICTED: simila ( 341) 790 191.6 6.9e-47 gi|134024825|gb|AAI34721.1| CD2BP2 protein [Bos ta ( 341) 788 191.2 9.5e-47 gi|73958440|ref|XP_547057.2| PREDICTED: similar to ( 344) 779 189.1 4.1e-46 gi|149234218|ref|XP_001475490.1| PREDICTED: hypoth ( 111) 621 152.0 1.9e-35 gi|82407299|pdb|1SYX|B Chain B, The Crystal Struct ( 86) 613 150.0 5.7e-35 gi|148707943|gb|EDL39890.1| mCG50893 [Mus musculus ( 95) 606 148.4 1.9e-34 gi|109128207|ref|XP_001110303.1| PREDICTED: CD2 (c ( 337) 596 146.5 2.6e-33 gi|159162372|pdb|1GYF|A Chain A, Gyf Domain From H ( 62) 459 114.1 2.7e-24 gi|221222274|gb|ACM09798.1| CD2 antigen cytoplasmi ( 380) 394 99.5 4.1e-19 gi|28279704|gb|AAH45960.1| CD2 antigen (cytoplasmi ( 378) 390 98.6 7.8e-19 gi|47199314|emb|CAF88122.1| unnamed protein produc ( 323) 387 97.8 1.1e-18 gi|47217807|emb|CAG07221.1| unnamed protein produc ( 381) 387 97.9 1.3e-18 gi|149540610|ref|XP_001518429.1| PREDICTED: hypoth ( 296) 367 93.1 2.6e-17 gi|39850142|gb|AAH64226.1| CAP-GLY domain containi ( 400) 339 86.7 3.1e-15 gi|49670701|gb|AAH75535.1| CAP-GLY domain containi ( 400) 339 86.7 3.1e-15 gi|210109090|gb|EEA56970.1| hypothetical protein B ( 363) 318 81.8 8.4e-14 gi|28279437|gb|AAH45270.1| Cd2bp2 protein [Xenopus ( 403) 317 81.6 1.1e-13 gi|80476958|gb|AAI08871.1| Cd2bp2 protein [Xenopus ( 403) 317 81.6 1.1e-13 gi|115636731|ref|XP_001191509.1| PREDICTED: simila ( 284) 305 78.7 5.6e-13 gi|198426466|ref|XP_002127802.1| PREDICTED: simila ( 373) 303 78.3 9.6e-13 gi|156223772|gb|EDO44604.1| predicted protein [Nem ( 337) 302 78.1 1e-12 gi|190582557|gb|EDV22630.1| hypothetical protein T ( 303) 271 70.8 1.4e-10 gi|215503656|gb|EEC13150.1| conserved hypothetical ( 332) 268 70.1 2.5e-10 gi|31076777|sp|Q9VKV5.1|LIN1_DROME RecName: Full=L ( 319) 254 66.9 2.3e-09 gi|17861590|gb|AAL39272.1| GH13760p [Drosophila me ( 319) 254 66.9 2.3e-09 gi|194190972|gb|EDX04548.1| GD23703 [Drosophila si ( 318) 253 66.6 2.7e-09 gi|194175223|gb|EDW88834.1| GE18946 [Drosophila ya ( 320) 252 66.4 3.2e-09 gi|194130401|gb|EDW52444.1| GM18415 [Drosophila se ( 318) 251 66.2 3.7e-09 gi|190661358|gb|EDV58550.1| GG10134 [Drosophila er ( 320) 251 66.2 3.7e-09 gi|54645730|gb|EAL34468.1| GA18730 [Drosophila pse ( 314) 239 63.4 2.5e-08 gi|194106284|gb|EDW28327.1| GL19140 [Drosophila pe ( 316) 239 63.4 2.6e-08 gi|190616827|gb|EDV32351.1| GF15791 [Drosophila an ( 320) 237 62.9 3.6e-08 gi|193914485|gb|EDW13352.1| GI18162 [Drosophila mo ( 312) 236 62.7 4.1e-08 gi|193900113|gb|EDV98979.1| GH13298 [Drosophila gr ( 311) 235 62.4 4.8e-08 gi|156546946|ref|XP_001605526.1| PREDICTED: simila ( 340) 234 62.2 6.1e-08 gi|91081321|ref|XP_969973.1| PREDICTED: similar to ( 314) 232 61.7 7.9e-08 gi|194161149|gb|EDW76050.1| GK15260 [Drosophila wi ( 326) 230 61.3 1.1e-07 gi|194147603|gb|EDW63301.1| GJ14592 [Drosophila vi ( 312) 229 61.0 1.3e-07 gi|110755361|ref|XP_624215.2| PREDICTED: similar t ( 317) 225 60.1 2.5e-07 gi|126334620|ref|XP_001370986.1| PREDICTED: hypoth ( 286) 219 58.7 5.9e-07 >>gi|33337731|gb|AAQ13502.1|AF109192_1 FWP010 [Homo sapi (190 aa) initn: 880 init1: 880 opt: 880 Z-score: 1114.9 bits: 212.4 E(): 2.1e-53 Smith-Waterman score: 880; 100.000% identity (100.000% similar) in 124 aa overlap (1-124:67-190) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::::::::::::::: gi|333 KGPGQPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTLGPHNPTPPPS 40 50 60 70 80 90 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW 100 110 120 130 140 150 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT :::::::::::::::::::::::::::::::::: gi|333 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT 160 170 180 190 >>gi|31339956|sp|O95400.1|CD2B2_HUMAN RecName: Full=CD2 (341 aa) initn: 880 init1: 880 opt: 880 Z-score: 1111.2 bits: 212.6 E(): 3.4e-53 Smith-Waterman score: 880; 100.000% identity (100.000% similar) in 124 aa overlap (1-124:218-341) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::::::::::::::: gi|313 KGPGQPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTLGPHNPTPPPS 190 200 210 220 230 240 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|313 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW 250 260 270 280 290 300 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT :::::::::::::::::::::::::::::::::: gi|313 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT 310 320 330 340 >>gi|109128203|ref|XP_001110388.1| PREDICTED: CD2 antige (341 aa) initn: 856 init1: 856 opt: 856 Z-score: 1081.1 bits: 207.0 E(): 1.6e-51 Smith-Waterman score: 856; 96.774% identity (99.194% similar) in 124 aa overlap (1-124:218-341) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::::.:::::::::: gi|109 KGPGRPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTVGPHNPTPPPS 190 200 210 220 230 240 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::.:::::::::::::::::: ::::::::::::::::::::::::::::::::: gi|109 LDMFAEEVAEEELETPTPTQRGEAESPGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW 250 260 270 280 290 300 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT ::::::::::::::::::::::::::::::.::: gi|109 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFELYT 310 320 330 340 >>gi|55728994|emb|CAH91235.1| hypothetical protein [Pong (341 aa) initn: 852 init1: 852 opt: 852 Z-score: 1076.0 bits: 206.1 E(): 3.1e-51 Smith-Waterman score: 852; 97.581% identity (98.387% similar) in 124 aa overlap (1-124:218-341) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::::::::::::::: gi|557 KGPGRPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTLGPHNPTPPPS 190 200 210 220 230 240 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::.::::::::: :::::::: ::::::::::::::::::::::::::::::::: gi|557 LDMFAEEVAEEELETPTLTQRGEAESPGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW 250 260 270 280 290 300 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT :::::::::::::::::::::::::::::::::: gi|557 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT 310 320 330 340 >>gi|55730034|emb|CAH91742.1| hypothetical protein [Pong (341 aa) initn: 852 init1: 852 opt: 852 Z-score: 1076.0 bits: 206.1 E(): 3.1e-51 Smith-Waterman score: 852; 97.581% identity (98.387% similar) in 124 aa overlap (1-124:218-341) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::::::::::::::: gi|557 KGPGRPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTLGPHNPTPPPS 190 200 210 220 230 240 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::.::::::::: :::::::: ::::::::::::::::::::::::::::::::: gi|557 LDMFAEEVAEEELETPTLTQRGEAESPGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW 250 260 270 280 290 300 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT :::::::::::::::::::::::::::::::::: gi|557 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT 310 320 330 340 >>gi|90079185|dbj|BAE89272.1| unnamed protein product [M (339 aa) initn: 876 init1: 843 opt: 843 Z-score: 1064.8 bits: 204.0 E(): 1.3e-50 Smith-Waterman score: 843; 96.721% identity (99.180% similar) in 122 aa overlap (1-122:218-339) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::::.:::::::::: gi|900 KGPGRPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTVGPHNPTPPPS 190 200 210 220 230 240 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::.:::::::::::::::::: ::::::::::::::::::::::::::::::::: gi|900 LDMFAEEVAEEELETPTPTQRGEAESPGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW 250 260 270 280 290 300 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT ::::::::::::::::::::::::::::::.: gi|900 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFEL 310 320 330 >>gi|74178565|dbj|BAE32530.1| unnamed protein product [M (342 aa) initn: 804 init1: 804 opt: 804 Z-score: 1015.6 bits: 194.9 E(): 7.2e-48 Smith-Waterman score: 804; 91.129% identity (95.968% similar) in 124 aa overlap (1-124:219-342) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::.. : :.:::::: gi|741 KGTGRPNSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCRAQGSHDPTPPPS 190 200 210 220 230 240 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::.:: :::::::::: :::: ::::.:::::::::::::::::::::::::::: gi|741 LDMFAEEIAEGELETPTPTQREEAESAGDGLMDVMWEYKWENTGDAELYGPFTSAQMQTW 250 260 270 280 290 300 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT ::::::::::::::::::::::::::::::.::: gi|741 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFELYT 310 320 330 340 >>gi|31339987|sp|Q9CWK3.1|CD2B2_MOUSE RecName: Full=CD2 (342 aa) initn: 803 init1: 803 opt: 803 Z-score: 1014.4 bits: 194.6 E(): 8.4e-48 Smith-Waterman score: 803; 91.129% identity (95.968% similar) in 124 aa overlap (1-124:219-342) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::.. : :.:::::: gi|313 KGTGRPNSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCRAQGSHDPTPPPS 190 200 210 220 230 240 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::.:: :::::::::: :::: ::::.:::::::::::::::::::::::::::: gi|313 LDMFAEEVAEGELETPTPTQREEAESAGDGLMDVMWEYKWENTGDAELYGPFTSAQMQTW 250 260 270 280 290 300 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT ::::::::::::::::::::::::::::::.::: gi|313 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFELYT 310 320 330 340 >>gi|148685558|gb|EDL17505.1| mCG134114, isoform CRA_b [ (369 aa) initn: 803 init1: 803 opt: 803 Z-score: 1013.9 bits: 194.7 E(): 9e-48 Smith-Waterman score: 803; 91.129% identity (95.968% similar) in 124 aa overlap (1-124:246-369) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::.. : :.:::::: gi|148 KGTGRPNSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCRAQGSHDPTPPPS 220 230 240 250 260 270 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::.:: :::::::::: :::: ::::.:::::::::::::::::::::::::::: gi|148 LDMFAEEVAEGELETPTPTQREEAESAGDGLMDVMWEYKWENTGDAELYGPFTSAQMQTW 280 290 300 310 320 330 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT ::::::::::::::::::::::::::::::.::: gi|148 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFELYT 340 350 360 >>gi|149067756|gb|EDM17308.1| CD2 antigen (cytoplasmic t (340 aa) initn: 799 init1: 799 opt: 799 Z-score: 1009.4 bits: 193.7 E(): 1.6e-47 Smith-Waterman score: 799; 90.323% identity (95.968% similar) in 124 aa overlap (1-124:217-340) 10 20 30 KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPS :::::::::::::::::.: : :.:::::: gi|149 KGTGRPNSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCRTQGSHDPTPPPS 190 200 210 220 230 240 40 50 60 70 80 90 KIAA11 LDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW :::::::..: ::::::::.: ::.: ::::.:::::::::::::::::::::::::::: gi|149 LDMFAEEVTEGELETPTPTHREEADSAGDGLMDVMWEYKWENTGDAELYGPFTSAQMQTW 250 260 270 280 290 300 100 110 120 KIAA11 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT :::::::::::::::::::::::::::::::::: gi|149 VSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT 310 320 330 340 124 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 00:42:24 2009 done: Wed Mar 4 00:49:28 2009 Total Scan time: 1114.360 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]