hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19293481/chunk_1/iprscan-20080501-19293481.nocrc
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Query sequence: KIAA1176
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00324.11.fs Amino acid permease                         151.9    1.6e-42   3
PF00324.11.ls Amino acid permease                          92.0    1.7e-24   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00324.11.fs   1/3      94   190 ..     1   109 [.    54.0    3e-14
PF00324.11.ls   1/1      94   668 ..     1   527 []    92.0  1.7e-24
PF00324.11.fs   2/3     398   449 ..   237   288 ..    25.1  1.6e-06
PF00324.11.fs   3/3     478   668 ..   330   527 .]    72.8    3e-19

Alignments of top-scoring domains:
PF00324.11.fs: domain 1 of 3, from 94 to 190: score 54.0, E = 3e-14
                   *->HvqmialGgviGtGLfvgsgvvlaqaGpaglpllgyliagvviflvm
                      +v + +l +++G+ Lf+++ +v++ aG+    ++++ i++ ++ l++
    KIAA1176    94    GVYLPCLQNIFGVILFLRLTWVVGIAGIMES-FCMVFICCSCTMLTA 139  

                   lslgEmstngpvvsGsfytyasrflgpslGfatGwnylltvYwfswvfvi
                   +s+++++tng v +G+ y+++sr+lgp++G+a+G+            f++
    KIAA1176   140 ISMSAIATNGVVPAGGSYYMISRSLGPEFGGAVGLC-----------FYL 178  

                   aleltaasiliq<-*
                   +  + +a+++++   
    KIAA1176   179 GTTFAGAMYILG    190  

PF00324.11.ls: domain 1 of 1, from 94 to 668: score 92.0, E = 1.7e-24
                   *->HvqmialGgviGtGLfvgsgvvlaqaGpaglpllgyliagvviflvm
                      +v + +l +++G+ Lf+++ +v++ aG+    ++++ i++ ++ l++
    KIAA1176    94    GVYLPCLQNIFGVILFLRLTWVVGIAGIMES-FCMVFICCSCTMLTA 139  

                   lslgEmstngpvvsGsfytyasrflgpslGfatGwnylltvYwfswvfvi
                   +s+++++tng v +G+ y+++sr+lgp++G+a+G+      Y+ + ++++
    KIAA1176   140 ISMSAIATNGVVPAGGSYYMISRSLGPEFGGAVGLC----FYLGTTFAGA 185  

                   aleltaasiliqfwesfpdipylwvwgsivdSgpndiRvIgavfivvlli
                   ++ l++  il+ ++++  +i+++   +  +   +n  Rv g+  ++ + +
    KIAA1176   186 MYILGTIEILLAYLFPAMAIFKAEDASGEAAAMLNNMRVYGTCVLTCMAT 235  

                   inlvgvKgygeaEfwfalikviaiigfiivgavviillfgggpndg....
                   + +vgvK+  ++  +f+ + +++i++ + +      + + ++p++++   
    KIAA1176   236 VVFVGVKYVNKFALVFLGCVILSILAIYAGV-----IKSAFDPPNFpicl 280  

                   ..................................................
                    ++++ ++++ +   +   +++++ +++  +   +++  + + ++  +++
    KIAA1176   281 lgnrtlsrhgfdvcaklawegnetvttrlwglfcssrflnatcdeyftrn 330  

                   ...........................ll.fhaigfrylgdpgaifknnf
                   + ++ ++ ++  ++  +++  ++  +++   ++ g  ++g + +    + 
    KIAA1176   331 nvteiqgipgaasglikenlwssyltkGViVERSGMTSVGLADG----TP 376  

                   ppgfapspgtgsFlgflsvfv....iaaFaFtGielvgiaAgEsknPrKa
                   +         + F+++ s f    +i++++ tGi+++ + +g++++ +K+
    KIAA1176   377 IDM----DHPYVFSDMTSYFTllvgIYFPSVTGIMAGSNRSGDLRDAQKS 422  

                   iPkAilqvvwritifYilsllaigllvpwndpglladsasaFFdCkpdcs
                   iP ++++++  +  +Yi s+++ g+++ +  +     +a+          
    KIAA1176   423 IPTGTILAIATTSAVYISSVVLFGACIEGVVLRDKFGEAVN--------- 463  

                   aSPfviafknlgikglah..linaviLtaaLSaansslysgsRmlyaLAr
                    + +v      g  +++++ +i+++ + ++ +a++ sl++++R l+a +r
    KIAA1176   464 -GNLV-----VGTLAWPSpwVIVIGSFFSTCGAGLQSLTGAPRLLQAISR 507  

                   dglaPikkflkkvdksgvPlraillstaisllavavlwliillaslnpaa
                   dg+ P+  +++  + +g+P  a+ll+++i  +++       l+asl + a
    KIAA1176   508 DGIVPFLQVFGHGKANGEPTWALLLTACICEIGI-------LIASLDEVA 550  

                   pivfnfllaisgliglivwllislshlrfRkafkyqgrsidelpfkaplg
                   pi + f+l  +++ +l++    +l  +++R+ f+y+ + ++ l+  ++l+
    KIAA1176   551 PILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLA 600  

                   pfgvilalaaliiilliqayyaflpvpkgpktwgaadfaalyltvllfii
                    ++ + +  al+++l++ ++y +  +++++k wg++ + ++ + +   ++
    KIAA1176   601 LMFICSWYYALVAMLIAGLIYKYIEYRGAEKEWGDGIRGLSLSAARYALL 650  

                   lligyklhvknkkpqvlk<-*
                   +l  +  h+kn++pq+l+   
    KIAA1176   651 RLEEGPPHTKNWRPQLLV    668  

PF00324.11.fs: domain 2 of 3, from 398 to 449: score 25.1, E = 1.6e-06
                   *->iaaFaFtGielvgiaAgEsknPrKaiPkAilqvvwritifYilslla
                      i++++ tGi+++ + +g++++ +K+iP ++++++  +  +Yi s+++
    KIAA1176   398    IYFPSVTGIMAGSNRSGDLRDAQKSIPTGTILAIATTSAVYISSVVL 444  

                   igllv<-*
                    g+++   
    KIAA1176   445 FGACI    449  

PF00324.11.fs: domain 3 of 3, from 478 to 668: score 72.8, E = 3e-19
                   *->linaviLtaaLSaansslysgsRmlyaLArdglaPikkflkkvdksg
                      +i+++ + ++ +a++ sl++++R l+a +rdg+ P+  +++  + +g
    KIAA1176   478    VIVIGSFFSTCGAGLQSLTGAPRLLQAISRDGIVPFLQVFGHGKANG 524  

                   vPlraillstaisllavavlwliillaslnpaapivfnfllaisgligli
                   +P  a+ll+++i  +++       l+asl + api + f+l  +++ +l+
    KIAA1176   525 EPTWALLLTACICEIGI-------LIASLDEVAPILSMFFLMCYMFVNLA 567  

                   vwllislshlrfRkafkyqgrsidelpfkaplgpfgvilalaaliiilli
                   +    +l  +++R+ f+y+ + ++ l+  ++l+ ++ + +  al+++l++
    KIAA1176   568 CAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYYALVAMLIA 617  

                   qayyaflpvpkgpktwgaadfaalyltvllfiilligyklhvknkkpqvl
                    ++y +  +++++k wg++ + ++ + +   +++l  +  h+kn++pq+l
    KIAA1176   618 GLIYKYIEYRGAEKEWGDGIRGLSLSAARYALLRLEEGPPHTKNWRPQLL 667  

                   k<-*
                   +   
    KIAA1176   668 V    668  

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