# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg04224mrp1.fasta.huge -Q ../query/KIAA1170.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1170, 838 aa vs ./tmplib.24314 library 1986667 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.7475+/-0.00629; mu= 14.4655+/- 0.428 mean_var=140.0830+/-32.307, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.108363 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1761 ( 837 res) ha03234 ( 837) 2559 412.0 1.3e-115 >>KIAA1761 ( 837 res) ha03234 (837 aa) initn: 3772 init1: 2142 opt: 2559 Z-score: 2167.2 bits: 412.0 E(): 1.3e-115 Smith-Waterman score: 3843; 70.000% identity (87.349% similar) in 830 aa overlap (8-836:23-837) 10 20 30 40 KIAA11 LTSSMEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRE : :... :: .. ..: . :.:: :.::.. KIAA17 MEPAVGGPGPLIVNNKQPQPPPPPPPAAAQPPPGAPRAAAG--LLPGGKAREFNRNQRKD 10 20 30 40 50 50 60 70 80 90 100 KIAA11 SEGSVDCPTLEFEYGDADGHAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELE ::: . : :::::.:.: ::::::::::::. :: ::.::::::. .: :.: ::. KIAA17 SEGYSESPDLEFEYADTDKWAAELSELYSYTEGPEFLMNRKCFEEDFRIHVTDKKWTELD 60 70 80 90 100 110 110 120 130 140 150 160 KIAA11 EDAQKAYIMGLLDRLEVVSRERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQ . .... : ::: :::..::.:::::::.::.::::::::.::..: : ::: ::: . KIAA17 TNQHRTHAMRLLDGLEVTAREKRLKVARAILYVAQGTFGECSSEAEVQSWMRYNIFLLLE 120 130 140 150 160 170 170 180 190 200 210 220 KIAA11 MGTFSTFLELLHMEIDNSQACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDP .:::....:::.:::::: :::::.::::.:.::::.:::::..:::.::... : : : KIAA17 VGTFNALVELLNMEIDNSAACSSAVRKPAISLADSTDLRVLLNIMYLIVETVHQECEGDK 180 190 200 210 220 230 230 240 250 260 270 280 KIAA11 CGWRTARETFRTELSFSMHNEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTL ::: :.:::.::. ..:.::::..::.:::::::: :::::.:::::::::.:. :: KIAA17 AEWRTMRQTFRAELGSPLYNNEPFAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTL 240 250 260 270 280 290 290 300 310 320 330 340 KIAA11 GGFEHLQTLKVQKRAELGLPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGR ::::.::..:..::. :::::: ::::.:...:::::::. . :: :.: . ::: KIAA17 GGFEELQSMKAEKRSILGLPPLPEDSIKVIRNMRAASPPASASDLIEQQ------QKRGR 300 310 320 330 340 350 350 360 370 380 390 400 KIAA11 RGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPP : ... : :::.:: .:::: .:... . :::::. : . .:.:: ::.: : :: KIAA17 R--EHKALIKQDNLDAFNERDPYKADD-SREEEEEN--DDDNSLEGETFPLERDE-VMPP 360 370 380 390 400 410 420 430 440 450 460 KIAA11 PSQAPLSAERVAFPKGLPWAPKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHE : : : ...:.. :::::::::::.:::: ::: ::.::::.:::.::.:.::::::::: KIAA17 PLQHP-QTDRLTCPKGLPWAPKVREKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHE 410 420 430 440 450 460 470 480 490 500 510 520 KIAA11 SVKTLKQHKYISIADVQIKNEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALL :.:::::::: :::.:: . ::: . :.: ::: : ..: : ::::.: :::::::::: KIAA17 SIKTLKQHKYTSIAEVQAQMEEEYLRSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALL 470 480 490 500 510 520 530 540 550 560 570 580 KIAA11 KILLAAAPTSKAKTDSINILADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLL ::::::::::::::::::::::::::::: :::::::::.:::::::.:::.::..:::: KIAA17 KILLAAAPTSKAKTDSINILADVLPEEMPTTVLQSMKLGVDVNRHKEVIVKAISAVLLLL 530 540 550 560 570 580 590 600 610 620 630 640 KIAA11 LKHFKLNHIYQFEYVSQHLVFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLP ::::::::.:::::..::::::::::::::::::::.::::::::::::::: :....:: KIAA17 LKHFKLNHVYQFEYMAQHLVFANCIPLILKFFNQNIMSYITAKNSISVLDYPHCVVHELP 590 600 610 620 630 640 650 660 670 680 690 700 KIAA11 ELTTESLEAGDNSQFCWRNLFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVK :::.:::::::..:::::::::::::::.::::::::::::::::::::::::::::::: KIAA17 ELTAESLEAGDSNQFCWRNLFSCINLLRILNKLTKWKHSRTMMLVVFKSAPILKRALKVK 650 660 670 680 690 700 710 720 730 740 750 760 KIAA11 QAMLQLYVLKLLKLQTKYLGRQWRKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQ :::.:::::::::.:::::::::::::::::::::::::::.:::::::::.:::::::: KIAA17 QAMMQLYVLKLLKVQTKYLGRQWRKSNMKTMSAIYQKVRHRLNDDWAYGNDLDARPWDFQ 710 720 730 740 750 760 770 780 790 800 810 820 KIAA11 AEECTLRANIEAFNSRRYDRPQDS-EFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREV ::::.:::::: ::.::::: ... .: :::::::::::::.::::::...:.::::::: KIAA17 AEECALRANIERFNARRYDRAHSNPDFLPVDNCLQSVLGQRVDLPEDFQMNYDLWLEREV 770 780 790 800 810 820 830 KIAA11 FSQPICWEELLQNH ::.:: :::::: KIAA17 FSKPISWEELLQ 830 838 residues in 1 query sequences 1986667 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:11:49 2008 done: Thu Dec 18 15:11:50 2008 Total Scan time: 0.610 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]