# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk00541.fasta.huge -Q ../query/KIAA1164.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1164, 390 aa
 vs ./tmplib.24314 library

1987115 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.2718+/-0.00651; mu= 7.6749+/- 0.443
 mean_var=158.6256+/-37.317, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.101833

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1390  ( 505 res)   hh08938                     ( 505) 1396 216.6 2.4e-57


>>KIAA1390  ( 505 res)   hh08938                          (505 aa)
 initn: 1388 init1: 1253 opt: 1396  Z-score: 1121.3  bits: 216.6 E(): 2.4e-57
Smith-Waterman score: 1419;  58.268% identity (78.478% similar) in 381 aa overlap (4-377:141-501)

                                          10        20        30   
KIAA11                            AASKERFPGQSVYHIKWIQWKEENTPIITQNEN
                                     . : :  . : .::: :: :.::::::. :
KIAA13 SAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTN
              120       130       140       150       160       170

            40        50        60        70        80        90   
KIAA11 GPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNM
       ::::::::.:.:.: :::::::. :.::...:: .::. .:. ::.: ::  .::..::.
KIAA13 GPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNV
              180       190       200       210       220       230

           100       110       120       130       140       150   
KIAA11 SDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQIDDIVKAVG
       .:::..: :: ::::::::::::  ::::::: ::::: ::::::::::::  . :.:::
KIAA13 DDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVG
              240       250       260       270       280       290

           160       170       180       190       200       210   
KIAA11 NCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTATQLTYHGLCELTSTVQEGELCVF
       . :::::::.::.::.:....::.::..:::::..::.:::::::::::....:::: ::
KIAA13 KLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVF
              300       310       320       330       340       350

           220       230       240       250       260             
KIAA11 FRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFHLR------P
       :::::::::::.:..::::::::::: ::.::::::::::::. ::::.:::       :
KIAA13 FRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGP
              360       370       380       390       400       410

       270       280       290       300       310       320       
KIAA11 PSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRA
        ..  .    .: :.:::::.::::::.:          : :..:::::..::.::    
KIAA13 GAEGGSGSPEKQLQVDQDYLIALSLQQQQPRG-------PLGLTDLELAQQLQQEE----
              420       430       440              450             

       330       340        350       360       370       380      
KIAA11 SQYYQEQEQAAAAAAAASTQA-QGQPAQASPSSGRQSGNSERKRKEPREKDKEKEKEKNS
          ::.:. :  .   . . . ::. :    .::: .:  ::...  .:.:         
KIAA13 ---YQQQQAAQPVRMRTRVLSLQGRGA----TSGRPAG--ERRQRPKHESDCILL     
        460       470       480           490         500          

        390
KIAA11 CVIL




390 residues in 1 query   sequences
1987115 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:36 2008 done: Thu Dec 18 15:11:37 2008
 Total Scan time:  0.380 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]