# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hj05107.fasta.nr -Q ../query/KIAA1162.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1162, 115 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7816816 sequences Expectation_n fit: rho(ln(x))= 5.7467+/-0.000193; mu= 1.8031+/- 0.011 mean_var=102.0457+/-19.257, 0's: 54 Z-trim: 98 B-trim: 198 in 1/64 Lambda= 0.126963 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|5918177|emb|CAB56344.1| hypothetical protein [H ( 193) 755 147.7 6e-34 gi|114680887|ref|XP_001167731.1| PREDICTED: thiore ( 321) 755 147.9 8.7e-34 gi|30173124|sp|Q9H1E5.1|TXD13_HUMAN RecName: Full= ( 349) 755 147.9 9.3e-34 gi|22760543|dbj|BAC11237.1| unnamed protein produc ( 349) 747 146.5 2.6e-33 gi|21707103|gb|AAH33787.1| Thioredoxin domain cont ( 349) 744 145.9 3.8e-33 gi|67969386|dbj|BAE01045.1| unnamed protein produc ( 349) 741 145.4 5.5e-33 gi|109092851|ref|XP_001116009.1| PREDICTED: thiore ( 349) 741 145.4 5.5e-33 gi|194224161|ref|XP_001495847.2| PREDICTED: simila ( 289) 554 111.0 9.8e-23 gi|148878448|gb|AAI46096.1| TXNDC13 protein [Bos t ( 348) 444 91.0 1.3e-16 gi|194672513|ref|XP_607985.4| PREDICTED: similar t ( 379) 421 86.8 2.6e-15 gi|62948085|gb|AAH94304.1| Txndc13 protein [Rattus ( 192) 364 76.1 2.2e-12 gi|149023392|gb|EDL80286.1| thioredoxin domain con ( 336) 364 76.3 3.3e-12 gi|68568749|sp|Q8C0L0.2|TXD13_MOUSE RecName: Full= ( 335) 342 72.3 5.3e-11 gi|26326683|dbj|BAC27085.1| unnamed protein produc ( 335) 342 72.3 5.3e-11 gi|30048202|gb|AAH50918.1| Txndc13 protein [Mus mu ( 340) 342 72.3 5.4e-11 gi|165902301|gb|EDR28158.1| hypothetical protein E ( 211) 200 46.1 0.0026 gi|109475889|ref|XP_001079034.1| PREDICTED: hypoth ( 344) 202 46.6 0.0029 gi|56526033|emb|CAH82055.1| hypothetical protein P ( 219) 197 45.5 0.0039 gi|56525182|emb|CAH81749.1| conserved hypothetical ( 391) 199 46.1 0.0046 gi|147790182|emb|CAN61324.1| hypothetical protein ( 160) 193 44.7 0.0051 gi|163779383|gb|EDQ92997.1| predicted protein [Mon ( 166) 192 44.5 0.006 gi|109465304|ref|XP_001074502.1| PREDICTED: hypoth ( 163) 191 44.3 0.0067 gi|149268827|ref|XP_001480853.1| PREDICTED: hypoth ( 246) 193 44.8 0.007 gi|109501910|ref|XP_001081106.1| PREDICTED: hypoth ( 158) 189 43.9 0.0084 gi|149264648|ref|XP_001473925.1| PREDICTED: hypoth ( 205) 190 44.2 0.009 gi|109474912|ref|XP_001059385.1| PREDICTED: hypoth ( 161) 188 43.8 0.0097 >>gi|5918177|emb|CAB56344.1| hypothetical protein [Homo (193 aa) initn: 755 init1: 755 opt: 755 Z-score: 765.7 bits: 147.7 E(): 6e-34 Smith-Waterman score: 755; 100.000% identity (100.000% similar) in 115 aa overlap (1-115:79-193) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDE :::::::::::::::::::::::::::::: gi|591 LVLVVISECFYVPLPRHLSERSEQNRRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDE 50 60 70 80 90 100 40 50 60 70 80 90 KIAA11 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|591 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ 110 120 130 140 150 160 100 110 KIAA11 PCPADTEVVEDSLRQRKSQHADKGL ::::::::::::::::::::::::: gi|591 PCPADTEVVEDSLRQRKSQHADKGL 170 180 190 >>gi|114680887|ref|XP_001167731.1| PREDICTED: thioredoxi (321 aa) initn: 755 init1: 755 opt: 755 Z-score: 762.8 bits: 147.9 E(): 8.7e-34 Smith-Waterman score: 755; 100.000% identity (100.000% similar) in 115 aa overlap (1-115:207-321) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDE :::::::::::::::::::::::::::::: gi|114 LVLVVISECFYVPLPRHLSERSEQNRRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDE 180 190 200 210 220 230 40 50 60 70 80 90 KIAA11 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ 240 250 260 270 280 290 100 110 KIAA11 PCPADTEVVEDSLRQRKSQHADKGL ::::::::::::::::::::::::: gi|114 PCPADTEVVEDSLRQRKSQHADKGL 300 310 320 >>gi|30173124|sp|Q9H1E5.1|TXD13_HUMAN RecName: Full=Thio (349 aa) initn: 755 init1: 755 opt: 755 Z-score: 762.3 bits: 147.9 E(): 9.3e-34 Smith-Waterman score: 755; 100.000% identity (100.000% similar) in 115 aa overlap (1-115:235-349) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDE :::::::::::::::::::::::::::::: gi|301 LVLVVISECFYVPLPRHLSERSEQNRRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDE 210 220 230 240 250 260 40 50 60 70 80 90 KIAA11 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|301 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ 270 280 290 300 310 320 100 110 KIAA11 PCPADTEVVEDSLRQRKSQHADKGL ::::::::::::::::::::::::: gi|301 PCPADTEVVEDSLRQRKSQHADKGL 330 340 >>gi|22760543|dbj|BAC11237.1| unnamed protein product [H (349 aa) initn: 747 init1: 747 opt: 747 Z-score: 754.4 bits: 146.5 E(): 2.6e-33 Smith-Waterman score: 747; 99.130% identity (99.130% similar) in 115 aa overlap (1-115:235-349) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDE :::::::::::::::::::::::::::::: gi|227 LVLVVISECFYVPLPRHLSERSEQNRRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDE 210 220 230 240 250 260 40 50 60 70 80 90 KIAA11 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|227 EEKEDLGDEDEAEEEEEEDNLAAGEDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ 270 280 290 300 310 320 100 110 KIAA11 PCPADTEVVEDSLRQRKSQHADKGL ::::::::::::::::::::::::: gi|227 PCPADTEVVEDSLRQRKSQHADKGL 330 340 >>gi|21707103|gb|AAH33787.1| Thioredoxin domain containi (349 aa) initn: 744 init1: 744 opt: 744 Z-score: 751.4 bits: 145.9 E(): 3.8e-33 Smith-Waterman score: 744; 99.130% identity (99.130% similar) in 115 aa overlap (1-115:235-349) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDE :::::::::::::::::::::::::::::: gi|217 LVLVVISECFYVPLPRHLSERSEQNRRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDE 210 220 230 240 250 260 40 50 60 70 80 90 KIAA11 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: gi|217 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPREDGVTREEVEPEEAEEGISEQ 270 280 290 300 310 320 100 110 KIAA11 PCPADTEVVEDSLRQRKSQHADKGL ::::::::::::::::::::::::: gi|217 PCPADTEVVEDSLRQRKSQHADKGL 330 340 >>gi|67969386|dbj|BAE01045.1| unnamed protein product [M (349 aa) initn: 741 init1: 741 opt: 741 Z-score: 748.4 bits: 145.4 E(): 5.5e-33 Smith-Waterman score: 741; 97.391% identity (100.000% similar) in 115 aa overlap (1-115:235-349) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDE :::::::::::::::::::::::::::::: gi|679 LVLVVISECFYVPLPRHLSERSEQNGRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDE 210 220 230 240 250 260 40 50 60 70 80 90 KIAA11 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ :::::::::::::::::::::::::::::::::::::::::.::::::::::::::.::. gi|679 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDSVTREEVEPEEAEEGVSEK 270 280 290 300 310 320 100 110 KIAA11 PCPADTEVVEDSLRQRKSQHADKGL ::::::::::::::::::::::::: gi|679 PCPADTEVVEDSLRQRKSQHADKGL 330 340 >>gi|109092851|ref|XP_001116009.1| PREDICTED: thioredoxi (349 aa) initn: 741 init1: 741 opt: 741 Z-score: 748.4 bits: 145.4 E(): 5.5e-33 Smith-Waterman score: 741; 97.391% identity (100.000% similar) in 115 aa overlap (1-115:235-349) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDE :::::::::::::::::::::::::::::: gi|109 LVLVVISECFYVPLPRHLSERSEQNGRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDE 210 220 230 240 250 260 40 50 60 70 80 90 KIAA11 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ :::::::::::::::::::::::::::::::::::::::::.::::::::::::::.::. gi|109 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDSVTREEVEPEEAEEGVSEK 270 280 290 300 310 320 100 110 KIAA11 PCPADTEVVEDSLRQRKSQHADKGL ::::::::::::::::::::::::: gi|109 PCPADTEVVEDSLRQRKSQHADKGL 330 340 >>gi|194224161|ref|XP_001495847.2| PREDICTED: similar to (289 aa) initn: 472 init1: 403 opt: 554 Z-score: 564.4 bits: 111.0 E(): 9.8e-23 Smith-Waterman score: 554; 76.316% identity (89.474% similar) in 114 aa overlap (1-114:178-288) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDE :::::::::::::::::::::::::::::: gi|194 LVLVVISECFYVPLPRHLSEHSEQNQESEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDE 150 160 170 180 190 200 40 50 60 70 80 90 KIAA11 EEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQ :::::::::::::::::::.:: ::::::....:::: : ..:... .:.:: . : gi|194 EEKEDLGDEDEAEEEEEEDSLAPGVDEERNDTQDQGPLRE---AQEDLDAHETEEDVPEP 210 220 230 240 250 260 100 110 KIAA11 PCPADTEVVEDSLRQRKSQHADKGL : :::::.::.:::::::::::: gi|194 PSSADTEVAEDTLRQRKSQHADKGP 270 280 >>gi|148878448|gb|AAI46096.1| TXNDC13 protein [Bos tauru (348 aa) initn: 432 init1: 250 opt: 444 Z-score: 454.4 bits: 91.0 E(): 1.3e-16 Smith-Waterman score: 444; 67.257% identity (79.646% similar) in 113 aa overlap (2-114:237-345) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDEE : .:::::.::::::::::::::::::::. gi|148 VLVVISECFYLPLPRNLSEHSEQNLRSEEVHLTEQLQDVEEEKDDSNEEENKDSLVDDED 210 220 230 240 250 260 40 50 60 70 80 90 KIAA11 EKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQP :::::: :.::::::: :. ::: :::.:.: : :: : .::. :. . ::: gi|148 EKEDLGYEEEAEEEEE-DGPAAGGDEEKSDARDPEPPRE---AREDEGSSEVGDDSLEQP 270 280 290 300 310 320 100 110 KIAA11 CPADTEVVEDSLRQRKSQHADKGL :: ::.. ::::::.::::::: gi|148 RPAGTEALGDSLRQRRSQHADKGPSA 330 340 >>gi|194672513|ref|XP_607985.4| PREDICTED: similar to th (379 aa) initn: 417 init1: 223 opt: 421 Z-score: 431.2 bits: 86.8 E(): 2.6e-15 Smith-Waterman score: 421; 62.832% identity (79.646% similar) in 113 aa overlap (2-114:268-376) 10 20 30 KIAA11 AHRAEQLQDAEEEKDDSNEEENKDSLVDDEE : .:::::.:::::::: :::::::.:::. gi|194 VLVVISECFYLPLTRNYSKHSEQNLRSEEVHITEQLQDVEEEKDDSNGEENKDSLADDED 240 250 260 270 280 290 40 50 60 70 80 90 KIAA11 EKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQP ::: :: : ::::.:: :. :::::::.:.. ::: : ..:. : : :. .:: gi|194 EKEALGYEKEAEEDEE-DSSAAGVDEEKSDTRDQGSLME---AQENEGPSEMEDDTPQQP 300 310 320 330 340 350 100 110 KIAA11 CPADTEVVEDSLRQRKSQHADKGL :: ::.:::::::..::::..: gi|194 HPAGTEAVEDSLRQHRSQHAERGPSA 360 370 115 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 23:32:32 2009 done: Tue Mar 3 23:39:09 2009 Total Scan time: 994.550 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]