hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19014487/chunk_1/iprscan-20080501-19014487.nocrc
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Query sequence: KIAA1159
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF06312.3.fs  Neurexophilin                             623.3   3.9e-196   1
PF06312.3.ls  Neurexophilin                             577.5   1.2e-170   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF06312.3.fs    1/1       1   221 []    49   286 .]   623.3 3.9e-196
PF06312.3.ls    1/1       1   221 []     1   286 []   577.5 1.2e-170

Alignments of top-scoring domains:
PF06312.3.fs: domain 1 of 1, from 1 to 221: score 623.3, E = 3.9e-196
                   *->dPerddselknrlrvsrKrssiskksrlafrGkendtdldlrydtPe
                      dPerdd+e+++r+rv+rKr++is+ksr+++                 
    KIAA1159     1    DPERDDHEGQPRPRVPRKRGHISPKSRPMA----------------- 30   

                   assledLwdwlanateiqeprprakrrpivktgKfKKmFGWGDFhSNIKT
                   +s+l++L++++++a++i++++p+++++++++++K+KK+FGWGDF+SNIKT
    KIAA1159    31 NSTLLGLLAPPGEAWGILGQPPNRPNHSPPPSAKVKKIFGWGDFYSNIKT 80   

                   VkLNLLiTGKIVDHGNGTFSVyFrHNsTGqGNvSvSLVPPsKvVEFeleq
                   V+LNLL+TGKIVDHGNGTFSV+F+HN+TGqGN+S+SLVPPsK+VEF++eq
    KIAA1159    81 VALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEFHQEQ 130  

                   QivieaKeSKsFNCRiEyEKvdrakktsLCnyDPsKiCyqeqtQShvsWl
                   Qi+ieaK+SK+FNCR+E+EKv+r+++tsLC++DP+KiC+++++QS+++W+
    KIAA1159   131 QIFIEAKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWS 180  

                   CSkPFKViCiYIaFYStDYkLVQKVCPDYNYHSdTPYypSG<-*
                   CS+PFKV+C+YIaFYStDY+LVQKVCPDYNYHSdTPYypSG   
    KIAA1159   181 CSQPFKVVCVYIAFYSTDYRLVQKVCPDYNYHSDTPYYPSG    221  

PF06312.3.ls: domain 1 of 1, from 1 to 221: score 577.5, E = 1.2e-170
                   *->qllrclvlflvqgslyLviCdqedgvpksEGLdwedkdatGlkvGsv
                                                                     
    KIAA1159     -    ----------------------------------------------- -    

                   vdPerddselknrlrvsrKrssiskksrlafrGkendtdldlrydtPeas
                    dPerdd+e+++r+rv+rKr++is+ksr+++                 +s
    KIAA1159     1 -DPERDDHEGQPRPRVPRKRGHISPKSRPMA-----------------NS 32   

                   sledLwdwlanateiqeprprakrrpivktgKfKKmFGWGDFhSNIKTVk
                   +l++L++++++a++i++++p+++++++++++K+KK+FGWGDF+SNIKTV+
    KIAA1159    33 TLLGLLAPPGEAWGILGQPPNRPNHSPPPSAKVKKIFGWGDFYSNIKTVA 82   

                   LNLLiTGKIVDHGNGTFSVyFrHNsTGqGNvSvSLVPPsKvVEFeleqQi
                   LNLL+TGKIVDHGNGTFSV+F+HN+TGqGN+S+SLVPPsK+VEF++eqQi
    KIAA1159    83 LNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEFHQEQQI 132  

                   vieaKeSKsFNCRiEyEKvdrakktsLCnyDPsKiCyqeqtQShvsWlCS
                   +ieaK+SK+FNCR+E+EKv+r+++tsLC++DP+KiC+++++QS+++W+CS
    KIAA1159   133 FIEAKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCS 182  

                   kPFKViCiYIaFYStDYkLVQKVCPDYNYHSdTPYypSG<-*
                   +PFKV+C+YIaFYStDY+LVQKVCPDYNYHSdTPYypSG   
    KIAA1159   183 QPFKVVCVYIAFYSTDYRLVQKVCPDYNYHSDTPYYPSG    221  

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