hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19000795/chunk_1/iprscan-20080501-19000795.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1158 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 31.2 0.00014 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/1 45 155 .. 1 58 [] 31.2 0.00014 Alignments of top-scoring domains: SM00409: domain 1 of 1, from 45 to 155: score 31.2, E = 0.00014 *->pp.vtvkeGesvtLtCas...........titWy............. p++++++ G + +L+C+s + ++ + W+ ++ ++++ KIAA1158 45 PSeTEAVQGNPMKLRCIScmkreeveattVVEWFyrpeggkdfliye 91 ............................LtI.nvtpeDsesgGtYtCaat +++++ ++ +++ + +++++ ++ ++t+ nvt++Ds G YtC ++ KIAA1158 92 yrnghqevespfqgrlqwngskdlqdvsITVlNVTLNDS---GLYTCNVS 138 ...sgsasseqgttLtVl<-* + +a+ ++++ t l KIAA1158 139 refEFEAHR-PFVKTTRL 155 //