# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hj00081.fasta.nr -Q ../query/KIAA1158.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1158, 230 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7822215 sequences Expectation_n fit: rho(ln(x))= 4.2620+/-0.000186; mu= 12.1548+/- 0.011 mean_var=60.3190+/-12.104, 0's: 35 Z-trim: 56 B-trim: 3283 in 2/66 Lambda= 0.165138 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|109109234|ref|XP_001104555.1| PREDICTED: simila ( 294) 1529 372.5 3.9e-101 gi|12229762|sp|Q9NY72.1|SCN3B_HUMAN RecName: Full= ( 215) 1430 348.8 4e-94 gi|37999703|sp|Q8HXJ7.1|SCN3B_MACFA RecName: Full= ( 215) 1420 346.4 2.1e-93 gi|149717017|ref|XP_001503479.1| PREDICTED: simila ( 215) 1415 345.2 4.7e-93 gi|118597372|sp|Q2KI11.1|SCN3B_BOVIN RecName: Full ( 215) 1412 344.5 7.8e-93 gi|73954986|ref|XP_852775.1| PREDICTED: similar to ( 310) 1412 344.6 1e-92 gi|37999353|sp|Q9JK00.1|SCN3B_RAT RecName: Full=So ( 215) 1408 343.5 1.5e-92 gi|148693566|gb|EDL25513.1| sodium channel, voltag ( 230) 1405 342.8 2.6e-92 gi|37999668|sp|Q8BHK2.1|SCN3B_MOUSE RecName: Full= ( 215) 1397 340.9 9.2e-92 gi|15822812|gb|AAL07512.1| brain and heart sodium ( 215) 1389 339.0 3.5e-91 gi|126326871|ref|XP_001379971.1| PREDICTED: hypoth ( 385) 1280 313.3 3.4e-83 gi|148693570|gb|EDL25517.1| sodium channel, voltag ( 226) 1276 312.1 4.6e-83 gi|118101900|ref|XP_417884.2| PREDICTED: similar t ( 215) 1101 270.4 1.6e-70 gi|56789688|gb|AAH88017.1| Sodium channel, voltage ( 215) 957 236.1 3.3e-60 gi|50414782|gb|AAH77295.1| Scn3b-prov protein [Xen ( 215) 920 227.3 1.5e-57 gi|47225076|emb|CAF97491.1| unnamed protein produc ( 196) 731 182.2 5e-44 gi|94958227|gb|ABF47244.1| voltage-gated sodium ch ( 220) 712 177.7 1.3e-42 gi|1705869|sp|P53788.1|SCN1B_RABIT RecName: Full=S ( 218) 610 153.4 2.6e-35 gi|148692003|gb|EDL23950.1| sodium channel, voltag ( 298) 607 152.8 5.3e-35 gi|109124327|ref|XP_001093023.1| PREDICTED: simila ( 218) 605 152.2 5.9e-35 gi|399255|sp|Q00954.1|SCN1B_RAT RecName: Full=Sodi ( 218) 605 152.2 5.9e-35 gi|122142567|sp|Q17QN4.1|SCN1B_BOVIN RecName: Full ( 218) 605 152.2 5.9e-35 gi|75075097|sp|Q4PPC4.1|SCN1B_CANFA RecName: Full= ( 218) 605 152.2 5.9e-35 gi|1705868|sp|Q07699.1|SCN1B_HUMAN RecName: Full=S ( 218) 604 152.0 7e-35 gi|3023492|sp|P97952.1|SCN1B_MOUSE RecName: Full=S ( 218) 600 151.0 1.3e-34 gi|148529717|gb|ABQ82131.1| sodium channel beta 1 ( 222) 576 145.3 7.2e-33 gi|47211069|emb|CAF89684.1| unnamed protein produc ( 217) 575 145.1 8.3e-33 gi|94958215|gb|ABF47239.1| voltage-gated sodium ch ( 221) 551 139.4 4.4e-31 gi|129307122|gb|ABO30513.1| sodium channel beta1 s ( 221) 547 138.4 8.6e-31 gi|40225909|gb|AAH21266.2| SCN1B protein [Homo sap ( 186) 542 137.1 1.7e-30 gi|94958211|gb|ABF47237.1| voltage-gated sodium ch ( 211) 531 134.6 1.2e-29 gi|148693565|gb|EDL25512.1| sodium channel, voltag ( 77) 526 133.0 1.3e-29 gi|94958209|gb|ABF47236.1| voltage-gated sodium ch ( 209) 498 126.7 2.7e-27 gi|129307125|gb|ABO30514.1| sodium channel beta1 s ( 209) 492 125.3 7.3e-27 gi|157886087|emb|CAP09501.1| novel protein similar ( 220) 466 119.1 5.5e-25 gi|38607338|gb|AAR25552.1| voltage gated sodium ch ( 268) 337 88.5 1.1e-15 gi|6694221|gb|AAF25186.1|AF182949_1 voltage-gated ( 273) 337 88.5 1.1e-15 gi|169146753|emb|CAQ15361.1| novel protein similar ( 134) 325 85.3 5e-15 gi|47208096|emb|CAF95229.1| unnamed protein produc ( 215) 317 83.6 2.6e-14 gi|1374955|gb|AAB02428.1| voltage-dependent Na+ ch ( 66) 263 70.2 8.6e-11 gi|119889117|ref|XP_001256745.1| PREDICTED: simila ( 240) 256 69.1 6.8e-10 gi|127723|sp|P06907.1|MYP0_RAT RecName: Full=Myeli ( 248) 244 66.3 5e-09 gi|162139829|ref|NP_032649.2| myelin protein zero ( 248) 240 65.3 9.7e-09 gi|127722|sp|P27573.1|MYP0_MOUSE RecName: Full=Mye ( 248) 240 65.3 9.7e-09 gi|57111573|ref|XP_545771.1| PREDICTED: similar to ( 258) 238 64.9 1.4e-08 gi|21388555|emb|CAD32961.1| myelin protein zero [D ( 203) 235 64.0 1.9e-08 gi|169153940|emb|CAQ14305.1| myelin protein zero [ ( 203) 235 64.0 1.9e-08 gi|205324|gb|AAA41576.1| P0 myelin prepeptide ( 248) 233 63.6 3.1e-08 gi|109017820|ref|XP_001118030.1| PREDICTED: simila ( 256) 233 63.7 3.2e-08 gi|55250893|gb|AAH85603.1| Myelin protein zero [Da ( 203) 232 63.3 3.2e-08 >>gi|109109234|ref|XP_001104555.1| PREDICTED: similar to (294 aa) initn: 1529 init1: 1529 opt: 1529 Z-score: 1971.9 bits: 372.5 E(): 3.9e-101 Smith-Waterman score: 1529; 99.130% identity (100.000% similar) in 230 aa overlap (1-230:65-294) 10 20 30 KIAA11 RSWGGESLGSRQPQKMPAFNRLFPLASLVL :::::::::::::::::::::::::.:::: gi|109 SVVGTRPAEEAVRVDEAGAAGVGGSQSECSRSWGGESLGSRQPQKMPAFNRLFPLVSLVL 40 50 60 70 80 90 40 50 60 70 80 90 KIAA11 IYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIY :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IYWASVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIY 100 110 120 130 140 150 100 110 120 130 140 150 KIAA11 EYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFV 160 170 180 190 200 210 160 170 180 190 200 210 KIAA11 KTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENA 220 230 240 250 260 270 220 230 KIAA11 SDYLAIPSENKENSAVPVEE :::::::::::::::::::: gi|109 SDYLAIPSENKENSAVPVEE 280 290 >>gi|12229762|sp|Q9NY72.1|SCN3B_HUMAN RecName: Full=Sodi (215 aa) initn: 1430 init1: 1430 opt: 1430 Z-score: 1846.1 bits: 348.8 E(): 4e-94 Smith-Waterman score: 1430; 100.000% identity (100.000% similar) in 215 aa overlap (16-230:1-215) 10 20 30 40 50 60 KIAA11 RSWGGESLGSRQPQKMPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRC ::::::::::::::::::::::::::::::::::::::::::::: gi|122 MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRC 10 20 30 40 70 80 90 100 110 120 KIAA11 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI 50 60 70 80 90 100 130 140 150 160 170 180 KIAA11 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL 110 120 130 140 150 160 190 200 210 220 230 KIAA11 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE 170 180 190 200 210 >>gi|37999703|sp|Q8HXJ7.1|SCN3B_MACFA RecName: Full=Sodi (215 aa) initn: 1420 init1: 1420 opt: 1420 Z-score: 1833.2 bits: 346.4 E(): 2.1e-93 Smith-Waterman score: 1420; 99.070% identity (100.000% similar) in 215 aa overlap (16-230:1-215) 10 20 30 40 50 60 KIAA11 RSWGGESLGSRQPQKMPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRC ::::::::::.:::::::.:::::::::::::::::::::::::: gi|379 MPAFNRLFPLVSLVLIYWASVCFPVCVEVPSETEAVQGNPMKLRC 10 20 30 40 70 80 90 100 110 120 KIAA11 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI 50 60 70 80 90 100 130 140 150 160 170 180 KIAA11 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL 110 120 130 140 150 160 190 200 210 220 230 KIAA11 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE 170 180 190 200 210 >>gi|149717017|ref|XP_001503479.1| PREDICTED: similar to (215 aa) initn: 1415 init1: 1415 opt: 1415 Z-score: 1826.8 bits: 345.2 E(): 4.7e-93 Smith-Waterman score: 1415; 98.605% identity (99.535% similar) in 215 aa overlap (16-230:1-215) 10 20 30 40 50 60 KIAA11 RSWGGESLGSRQPQKMPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRC ::::::::::::::::.:. ::::::::::::::::::::::::: gi|149 MPAFNRLFPLASLVLIFWAHVCFPVCVEVPSETEAVQGNPMKLRC 10 20 30 40 70 80 90 100 110 120 KIAA11 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI 50 60 70 80 90 100 130 140 150 160 170 180 KIAA11 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL 110 120 130 140 150 160 190 200 210 220 230 KIAA11 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE 170 180 190 200 210 >>gi|118597372|sp|Q2KI11.1|SCN3B_BOVIN RecName: Full=Sod (215 aa) initn: 1412 init1: 1412 opt: 1412 Z-score: 1822.9 bits: 344.5 E(): 7.8e-93 Smith-Waterman score: 1412; 98.605% identity (99.535% similar) in 215 aa overlap (16-230:1-215) 10 20 30 40 50 60 KIAA11 RSWGGESLGSRQPQKMPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRC :::::::::::::.:: ::.::::::::::::::::::::::::: gi|118 MPAFNRLFPLASLLLILWVGVCFPVCVEVPSETEAVQGNPMKLRC 10 20 30 40 70 80 90 100 110 120 KIAA11 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI 50 60 70 80 90 100 130 140 150 160 170 180 KIAA11 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL 110 120 130 140 150 160 190 200 210 220 230 KIAA11 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE 170 180 190 200 210 >>gi|73954986|ref|XP_852775.1| PREDICTED: similar to Sod (310 aa) initn: 1408 init1: 1408 opt: 1412 Z-score: 1820.9 bits: 344.6 E(): 1e-92 Smith-Waterman score: 1412; 94.248% identity (97.788% similar) in 226 aa overlap (8-230:85-310) 10 20 30 KIAA11 RSWGGESLGSRQP---QKMPAFNRLFPLASLVLIYWV .. :.: .:::::::::::::::::.:: gi|739 GPGDRALPGSGRRARSARSRTPRPARSRALISPRKPPARKKMPAFNRLFPLASLVLIFWV 60 70 80 90 100 110 40 50 60 70 80 90 KIAA11 SVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRN .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 NVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRN 120 130 140 150 160 170 100 110 120 130 140 150 KIAA11 GHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTR :.::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|739 GQQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFAFEAHRPFVKTTR 180 190 200 210 220 230 160 170 180 190 200 210 KIAA11 LIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYL 240 250 260 270 280 290 220 230 KIAA11 AIPSENKENSAVPVEE ::::::::.::::::: gi|739 AIPSENKESSAVPVEE 300 310 >>gi|37999353|sp|Q9JK00.1|SCN3B_RAT RecName: Full=Sodium (215 aa) initn: 1408 init1: 1408 opt: 1408 Z-score: 1817.8 bits: 343.5 E(): 1.5e-92 Smith-Waterman score: 1408; 98.140% identity (99.535% similar) in 215 aa overlap (16-230:1-215) 10 20 30 40 50 60 KIAA11 RSWGGESLGSRQPQKMPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRC :::::::.::::::::::: ::::::::::::::::::::::::: gi|379 MPAFNRLLPLASLVLIYWVRVCFPVCVEVPSETEAVQGNPMKLRC 10 20 30 40 70 80 90 100 110 120 KIAA11 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI 50 60 70 80 90 100 130 140 150 160 170 180 KIAA11 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL 110 120 130 140 150 160 190 200 210 220 230 KIAA11 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE ::::::::.:::::::::::::::::::::::::::::::::::.::::: gi|379 LVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSVVPVEE 170 180 190 200 210 >>gi|148693566|gb|EDL25513.1| sodium channel, voltage-ga (230 aa) initn: 1405 init1: 1405 opt: 1405 Z-score: 1813.6 bits: 342.8 E(): 2.6e-92 Smith-Waterman score: 1405; 97.235% identity (99.078% similar) in 217 aa overlap (14-230:14-230) 10 20 30 40 50 60 KIAA11 RSWGGESLGSRQPQKMPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRC .::::::::.::::::::::: ::::::::::::::::::: ::::: gi|148 QRSSLFSSRNHLREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVPSETEAVQGNSMKLRC 10 20 30 40 50 60 70 80 90 100 110 120 KIAA11 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI 70 80 90 100 110 120 130 140 150 160 170 180 KIAA11 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL 130 140 150 160 170 180 190 200 210 220 230 KIAA11 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE ::::::::.:::::::::::::::::::::::::::::::::::.::::: gi|148 LVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSVVPVEE 190 200 210 220 230 >>gi|37999668|sp|Q8BHK2.1|SCN3B_MOUSE RecName: Full=Sodi (215 aa) initn: 1397 init1: 1397 opt: 1397 Z-score: 1803.6 bits: 340.9 E(): 9.2e-92 Smith-Waterman score: 1397; 97.674% identity (99.070% similar) in 215 aa overlap (16-230:1-215) 10 20 30 40 50 60 KIAA11 RSWGGESLGSRQPQKMPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRC :::::::.::::::::::: ::::::::::::::::::: ::::: gi|379 MPAFNRLLPLASLVLIYWVRVCFPVCVEVPSETEAVQGNSMKLRC 10 20 30 40 70 80 90 100 110 120 KIAA11 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI 50 60 70 80 90 100 130 140 150 160 170 180 KIAA11 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL 110 120 130 140 150 160 190 200 210 220 230 KIAA11 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE ::::::::.:::::::::::::::::::::::::::::::::::.::::: gi|379 LVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSVVPVEE 170 180 190 200 210 >>gi|15822812|gb|AAL07512.1| brain and heart sodium chan (215 aa) initn: 1389 init1: 1389 opt: 1389 Z-score: 1793.3 bits: 339.0 E(): 3.5e-91 Smith-Waterman score: 1389; 97.209% identity (98.605% similar) in 215 aa overlap (16-230:1-215) 10 20 30 40 50 60 KIAA11 RSWGGESLGSRQPQKMPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRC :::::::.::::::::::: ::::::::::::::::::: ::::: gi|158 MPAFNRLLPLASLVLIYWVRVCFPVCVEVPSETEAVQGNSMKLRC 10 20 30 40 70 80 90 100 110 120 KIAA11 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 ISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSI 50 60 70 80 90 100 130 140 150 160 170 180 KIAA11 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 TVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYIL 110 120 130 140 150 160 190 200 210 220 230 KIAA11 LVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE ::::::::.::::::::::::::::: :::::::::::::::::.::::: gi|158 LVFLTLWLFIEMIYCYRKVSKAEEAAXENASDYLAIPSENKENSVVPVEE 170 180 190 200 210 230 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 23:11:45 2009 done: Tue Mar 3 23:17:51 2009 Total Scan time: 1309.530 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]