# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hh04176.fasta.nr -Q ../query/KIAA1155.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1155, 145 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827323 sequences Expectation_n fit: rho(ln(x))= 5.4457+/-0.000182; mu= 5.1579+/- 0.010 mean_var=71.6064+/-13.826, 0's: 34 Z-trim: 36 B-trim: 33 in 1/65 Lambda= 0.151565 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|109103355|ref|XP_001100423.1| PREDICTED: simila ( 162) 981 222.7 1.7e-56 gi|73981014|ref|XP_533009.2| PREDICTED: similar to ( 510) 919 209.4 5.3e-52 gi|119620180|gb|EAW99774.1| hCG1988939, isoform CR ( 144) 860 196.2 1.4e-48 gi|166977703|sp|Q9ULR5.2|PAI2B_HUMAN RecName: Full ( 123) 846 193.1 1e-47 gi|149036552|gb|EDL91170.1| similar to hypothetica ( 136) 769 176.3 1.3e-42 gi|81879547|sp|Q91W45.2|PAI2B_MOUSE RecName: Full= ( 136) 768 176.1 1.6e-42 gi|109472269|ref|XP_232121.3| PREDICTED: similar t ( 190) 769 176.4 1.8e-42 gi|26337695|dbj|BAC32533.1| unnamed protein produc ( 136) 767 175.8 1.8e-42 gi|148666694|gb|EDK99110.1| cDNA sequence BC017133 ( 123) 763 174.9 3e-42 gi|46362426|gb|AAH68990.1| Poly(A) binding protein ( 124) 702 161.6 3.2e-38 gi|54038392|gb|AAH84669.1| LOC495247 protein [Xeno ( 124) 688 158.5 2.7e-37 gi|27370897|gb|AAH41274.1| Paip2-prov protein [Xen ( 125) 682 157.2 6.6e-37 gi|80477808|gb|AAI08797.1| Unknown (protein for MG ( 124) 680 156.8 8.9e-37 gi|220678513|emb|CAX13383.1| novel protein similar ( 131) 551 128.6 2.9e-28 gi|220678514|emb|CAX13384.1| novel protein similar ( 131) 549 128.2 3.9e-28 gi|37589832|gb|AAH59597.1| Zgc:73265 [Danio rerio] ( 131) 541 126.4 1.3e-27 gi|209154732|gb|ACI33598.1| Polyadenylate-binding ( 136) 536 125.3 2.9e-27 gi|12052806|emb|CAB66575.1| hypothetical protein [ ( 127) 531 124.2 5.8e-27 gi|116248561|sp|Q3ZC67.1|PAIP2_BOVIN RecName: Full ( 124) 527 123.3 1.1e-26 gi|46397013|sp|Q9BPZ3.1|PAIP2_HUMAN RecName: Full= ( 127) 527 123.3 1.1e-26 gi|46397019|sp|Q9D6V8.1|PAIP2_MOUSE RecName: Full= ( 124) 525 122.9 1.4e-26 gi|148664717|gb|EDK97133.1| polyadenylate-binding ( 131) 525 122.9 1.5e-26 gi|63146090|gb|AAY33979.1| unknown [Oxyuranus scut ( 124) 524 122.7 1.7e-26 gi|74195604|dbj|BAE39611.1| unnamed protein produc ( 124) 524 122.7 1.7e-26 gi|57042649|ref|XP_535206.1| PREDICTED: similar to ( 124) 523 122.5 1.9e-26 gi|71297171|gb|AAH39337.1| PAIP2 protein [Homo sap ( 127) 523 122.5 2e-26 gi|82081781|sp|Q5ZJS6.1|PAIP2_CHICK RecName: Full= ( 127) 523 122.5 2e-26 gi|119582514|gb|EAW62110.1| poly(A) binding protei ( 127) 523 122.5 2e-26 gi|74181777|dbj|BAE32597.1| unnamed protein produc ( 124) 522 122.2 2.2e-26 gi|7106826|gb|AAF36138.1|AF151052_1 HSPC218 [Homo ( 127) 520 121.8 3.1e-26 gi|126290379|ref|XP_001368379.1| PREDICTED: simila ( 124) 519 121.6 3.5e-26 gi|75041082|sp|Q5R596.1|PAIP2_PONAB RecName: Full= ( 124) 517 121.1 4.8e-26 gi|12838033|dbj|BAB24053.1| unnamed protein produc ( 124) 514 120.5 7.5e-26 gi|27679758|ref|XP_215046.1| PREDICTED: similar to ( 124) 490 115.2 2.9e-24 gi|37590904|gb|AAH59655.1| Zgc:73337 protein [Dani ( 117) 475 111.9 2.6e-23 gi|209736876|gb|ACI69307.1| Polyadenylate-binding ( 123) 468 110.4 8e-23 gi|209737184|gb|ACI69461.1| Polyadenylate-binding ( 123) 463 109.3 1.7e-22 gi|209730384|gb|ACI66061.1| Polyadenylate-binding ( 123) 445 105.4 2.6e-21 gi|114602066|ref|XP_001172410.1| PREDICTED: poly(A ( 114) 438 103.9 7.1e-21 gi|109078859|ref|XP_001082025.1| PREDICTED: poly(A ( 116) 435 103.2 1.1e-20 gi|149017215|gb|EDL76266.1| rCG49211, isoform CRA_ ( 143) 434 103.0 1.6e-20 gi|149558133|ref|XP_001521106.1| PREDICTED: hypoth ( 158) 426 101.3 5.7e-20 gi|149579622|ref|XP_001520285.1| PREDICTED: simila ( 196) 424 100.9 9.2e-20 gi|47210898|emb|CAF90408.1| unnamed protein produc ( 173) 384 92.1 3.6e-17 gi|47202174|emb|CAF87427.1| unnamed protein produc ( 122) 375 90.1 1e-16 gi|148666695|gb|EDK99111.1| cDNA sequence BC017133 ( 69) 289 71.1 3e-11 gi|167872582|gb|EDS35965.1| polyA-binding protein ( 149) 237 60.0 1.5e-07 gi|210082080|gb|EEA30845.1| hypothetical protein B ( 154) 227 57.8 7e-07 gi|91093887|ref|XP_968714.1| PREDICTED: similar to ( 138) 226 57.5 7.5e-07 gi|66525424|ref|XP_625228.1| PREDICTED: similar to ( 150) 221 56.5 1.7e-06 >>gi|109103355|ref|XP_001100423.1| PREDICTED: similar to (162 aa) initn: 981 init1: 981 opt: 981 Z-score: 1170.5 bits: 222.7 E(): 1.7e-56 Smith-Waterman score: 981; 99.310% identity (100.000% similar) in 145 aa overlap (1-145:18-162) 10 20 30 40 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMANTSPSVKSKEDQGL ::::::::::::::::::::.:::::::::::::::::::::: gi|109 MGRCPATNGLGSGAGRGALGGVAEYDLKEGLLVSPGSIIMNGSNMANTSPSVKSKEDQGL 10 20 30 40 50 60 50 60 70 80 90 100 KIAA11 SGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQ 70 80 90 100 110 120 110 120 130 140 KIAA11 AMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPGEKY :::::::::::::::::::::::::::::::::::::::::: gi|109 AMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPGEKY 130 140 150 160 >>gi|73981014|ref|XP_533009.2| PREDICTED: similar to Pol (510 aa) initn: 919 init1: 919 opt: 919 Z-score: 1089.8 bits: 209.4 E(): 5.3e-52 Smith-Waterman score: 919; 91.034% identity (98.621% similar) in 145 aa overlap (1-145:366-510) 10 20 30 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMAN :::: :::::.::::.::::.:::::..:: gi|739 ERRFSRAVAHALVQEAETLLATATSAATAEALGGGAEYDLEEGLLISPGSIIMNGSSVAN 340 350 360 370 380 390 40 50 60 70 80 90 KIAA11 TSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEE :::.:::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|739 TSPNVKSKEDQGLNGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEE 400 410 420 430 440 450 100 110 120 130 140 KIAA11 DQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPGEKY :::::::::::::::::::::::::::..::.:.:::::::::::::::::: :: gi|739 DQDWFIPSRDLPQAMGQLQQQLNGLSVNDGHNSDDILSKSNLNPDAKEFIPGVKY 460 470 480 490 500 510 >>gi|119620180|gb|EAW99774.1| hCG1988939, isoform CRA_a (144 aa) initn: 860 init1: 860 opt: 860 Z-score: 1028.2 bits: 196.2 E(): 1.4e-48 Smith-Waterman score: 860; 99.206% identity (100.000% similar) in 126 aa overlap (20-145:19-144) 10 20 30 40 50 60 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWME :.::::::::::::::::::::::::::::::::::::::: gi|119 MPHLPGRRSPLLLCLAVRSIIMNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWME 10 20 30 40 50 70 80 90 100 110 120 KIAA11 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEG 60 70 80 90 100 110 130 140 KIAA11 HDSEDILSKSNLNPDAKEFIPGEKY ::::::::::::::::::::::::: gi|119 HDSEDILSKSNLNPDAKEFIPGEKY 120 130 140 >>gi|166977703|sp|Q9ULR5.2|PAI2B_HUMAN RecName: Full=Pol (123 aa) initn: 846 init1: 846 opt: 846 Z-score: 1012.7 bits: 193.1 E(): 1e-47 Smith-Waterman score: 846; 100.000% identity (100.000% similar) in 123 aa overlap (23-145:1-123) 10 20 30 40 50 60 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWME :::::::::::::::::::::::::::::::::::::: gi|166 MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWME 10 20 30 70 80 90 100 110 120 KIAA11 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEG 40 50 60 70 80 90 130 140 KIAA11 HDSEDILSKSNLNPDAKEFIPGEKY ::::::::::::::::::::::::: gi|166 HDSEDILSKSNLNPDAKEFIPGEKY 100 110 120 >>gi|149036552|gb|EDL91170.1| similar to hypothetical pr (136 aa) initn: 769 init1: 769 opt: 769 Z-score: 921.1 bits: 176.3 E(): 1.3e-42 Smith-Waterman score: 769; 88.710% identity (98.387% similar) in 124 aa overlap (22-145:13-136) 10 20 30 40 50 60 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWME :::::..:.:::::: ::::::.::.::::::::::::: gi|149 MTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKENPFAEYMWME 10 20 30 40 50 70 80 90 100 110 120 KIAA11 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEG :::::::::::::::::::::::::::::::::::::.::::::.:.::::::::::... gi|149 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQLNGLSVGDS 60 70 80 90 100 110 130 140 KIAA11 HDSEDILSKSNLNPDAKEFIPGEKY :.:::::::::::::::::::: :: gi|149 HESEDILSKSNLNPDAKEFIPGVKY 120 130 >>gi|81879547|sp|Q91W45.2|PAI2B_MOUSE RecName: Full=Poly (136 aa) initn: 768 init1: 768 opt: 768 Z-score: 919.9 bits: 176.1 E(): 1.6e-42 Smith-Waterman score: 768; 87.903% identity (98.387% similar) in 124 aa overlap (22-145:13-136) 10 20 30 40 50 60 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWME :::::..:.:::::: ::::::.::.::::::::::::: gi|818 MTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKENPFAEYMWME 10 20 30 40 50 70 80 90 100 110 120 KIAA11 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEG :::::::::::::::::::::::::::::::::::::.::::::.:.::::::::::... gi|818 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQLNGLSVGDS 60 70 80 90 100 110 130 140 KIAA11 HDSEDILSKSNLNPDAKEFIPGEKY :.:::::::::::::::::.:: :: gi|818 HESEDILSKSNLNPDAKEFVPGVKY 120 130 >>gi|109472269|ref|XP_232121.3| PREDICTED: similar to Po (190 aa) initn: 769 init1: 769 opt: 769 Z-score: 918.9 bits: 176.4 E(): 1.8e-42 Smith-Waterman score: 769; 88.710% identity (98.387% similar) in 124 aa overlap (22-145:67-190) 10 20 30 40 50 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMANTSPSVKSKEDQGLSGHDEKEN :::::..:.:::::: ::::::.::.:::: gi|109 GAALSARPGTWEGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKEN 40 50 60 70 80 90 60 70 80 90 100 110 KIAA11 PFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQ ::::::::::::::::::::::::::::::::::::::::::::::.::::::.:.:::: gi|109 PFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQ 100 110 120 130 140 150 120 130 140 KIAA11 LNGLSVSEGHDSEDILSKSNLNPDAKEFIPGEKY ::::::...:.:::::::::::::::::::: :: gi|109 LNGLSVGDSHESEDILSKSNLNPDAKEFIPGVKY 160 170 180 190 >>gi|26337695|dbj|BAC32533.1| unnamed protein product [M (136 aa) initn: 767 init1: 767 opt: 767 Z-score: 918.7 bits: 175.8 E(): 1.8e-42 Smith-Waterman score: 767; 87.903% identity (98.387% similar) in 124 aa overlap (22-145:13-136) 10 20 30 40 50 60 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWME :::::..:.:::::: ::::::.::.::::::::::::: gi|263 MTTLNTGSARISIMNGSSVAGTSPSVKCKEDQGLNGHEEKENPFAEYMWME 10 20 30 40 50 70 80 90 100 110 120 KIAA11 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEG :::::::::::::::::::::::::::::::::::::.::::::.:.::::::::::... gi|263 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQLNGLSVGDS 60 70 80 90 100 110 130 140 KIAA11 HDSEDILSKSNLNPDAKEFIPGEKY :.:::::::::::::::::.:: :: gi|263 HESEDILSKSNLNPDAKEFVPGVKY 120 130 >>gi|148666694|gb|EDK99110.1| cDNA sequence BC017133, is (123 aa) initn: 763 init1: 763 opt: 763 Z-score: 914.6 bits: 174.9 E(): 3e-42 Smith-Waterman score: 763; 87.805% identity (98.374% similar) in 123 aa overlap (23-145:1-123) 10 20 30 40 50 60 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWME ::::..:.:::::: ::::::.::.::::::::::::: gi|148 MNGSSVASTSPSVKCKEDQGLNGHEEKENPFAEYMWME 10 20 30 70 80 90 100 110 120 KIAA11 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEG :::::::::::::::::::::::::::::::::::::.::::::.:.::::::::::... gi|148 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQLNGLSVGDS 40 50 60 70 80 90 130 140 KIAA11 HDSEDILSKSNLNPDAKEFIPGEKY :.:::::::::::::::::.:: :: gi|148 HESEDILSKSNLNPDAKEFVPGVKY 100 110 120 >>gi|46362426|gb|AAH68990.1| Poly(A) binding protein int (124 aa) initn: 609 init1: 609 opt: 702 Z-score: 842.5 bits: 161.6 E(): 3.2e-38 Smith-Waterman score: 702; 79.839% identity (96.774% similar) in 124 aa overlap (23-145:1-124) 10 20 30 40 50 KIAA11 ALGGVAEYDLKEGLLVSPGSVIMNGSNMANTSPSVKSKEDQGLSGHDEKEN-PFAEYMWM :::::..:.. ..::..:: ..::::.:: :::::::: gi|463 MNGSNIGNNTSNAKSNDDQVVNGHDENENNPFAEYMWM 10 20 30 60 70 80 90 100 110 KIAA11 ENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSE ::::::::::::::::::::::::::::::::.:::::::::::..::::::::::.:.: gi|463 ENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDKDWFIPSRDLPQGVGQLQQQLNGLTVNE 40 50 60 70 80 90 120 130 140 KIAA11 GHDSEDILSKSNLNPDAKEFIPGEKY .:..:::::::.::::::::.:: :: gi|463 NHSTEDILSKSSLNPDAKEFVPGVKY 100 110 120 145 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 22:55:03 2009 done: Tue Mar 3 23:01:54 2009 Total Scan time: 1110.370 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]