hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18483074/chunk_1/iprscan-20080501-18483074.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1151 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00382 30.0 0.00033 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00382 1/1 1443 1597 .. 1 92 [] 30.0 0.00033 Alignments of top-scoring domains: SM00382: domain 1 of 1, from 1443 to 1597: score 30.0, E = 0.00033 *->pgevvllvGppGsGKTTlaralarllgp.........gviyidge.. +++++ l Gp+G+GKT l + la +l ++++++ +++ v +++ ++ KIAA1151 1443 KHRRLVLSGPSGTGKTYLTNRLAEYLVErsgrevtegIVSTFNMHqq 1489 ggqrirlalalark............dvlllDEitslld........... + + ++l l + ++ ++ ++ ++ + v+llD++ + +++ ++ + KIAA1151 1490 SCKDLQLYLSNLANqidretgigdvpLVILLDDLSEAGSiselvngaltc 1539 .....vtviattn........................dldpallrrrfdr + ++ +i+ttn++ + +++++ + + + + +++ ++ + l+r ++r KIAA1151 1540 kyhkcPYIIGTTNqpvkmtpnhglhlsfrmltfsnnvEPANGFLVRYLRR 1589 rivllril<-* ++v +++ KIAA1151 1590 KLVESDSD 1597 //