hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18400815/chunk_1/iprscan-20080501-18400815.nocrc
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Query sequence: KIAA1146
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                  75.8    5.4e-18   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/4      13    42 ..     1    30 []    13.8       24
SM00248    2/4      46    75 ..     1    30 []    28.9  0.00071
SM00248    3/4      79   108 ..     1    30 []    28.4  0.00099
SM00248    4/4     131   156 ..     1    30 []     4.7  1.1e+03

Alignments of top-scoring domains:
SM00248: domain 1 of 4, from 13 to 42: score 13.8, E = 24
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        +TpL +Aa  g+ ++v +L++kga++++   
    KIAA1146    13    LPCTPLRIAATAGHGSCVDFLIRKGAEVDL    42   

SM00248: domain 2 of 4, from 46 to 75: score 28.9, E = 0.00071
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+L++A+ ng+le  ++Ll++gad+n    
    KIAA1146    46    KGQTALYVAVVNGHLESTQILLEAGADPNG    75   

SM00248: domain 3 of 4, from 79 to 108: score 28.4, E = 0.00099
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +  Tp ++A + g+ +++k+L+++gad+++   
    KIAA1146    79    HRSTPVYHASRVGRADILKALIRYGADVDV    108  

SM00248: domain 4 of 4, from 131 to 156: score 4.7, E = 1.1e+03
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                          pL++ a++ nl + +lLl +ga+++    
    KIAA1146   131    ----PLYISAAYHNLQCFRLLLLAGANPDF    156  

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