hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18400815/chunk_1/iprscan-20080501-18400815.nocrc
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Query sequence: KIAA1146
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.fs Ankyrin repeat                                  80.7    1.6e-21   5
PF00023.20.ls Ankyrin repeat                                  76.9      6e-20   4
PF07525.6.fs SOCS box                                        55.2      5e-16   1
PF07525.6.ls SOCS box                                        57.1    5.2e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.ls   1/4      13    45 ..     1    33 []    22.7   0.0012
PF00023.20.fs   1/5      15    45 ..     3    33 .]    20.8  8.2e-05
PF00023.20.fs   2/5      46    74 ..     1    29 [.    26.7  1.9e-06
PF00023.20.ls   2/4      46    78 ..     1    33 []    26.5  8.7e-05
PF00023.20.fs   3/5      79   111 ..     1    33 []    18.5  0.00037
PF00023.20.ls   3/4      79   111 ..     1    33 []    20.5   0.0058
PF00023.20.ls   4/4     127   159 ..     1    33 []     7.2      2.6
PF00023.20.fs   4/5     131   159 ..     5    33 .]    10.5    0.059
PF00023.20.fs   5/5     176   204 ..     7    33 .]     4.2      3.4
PF07525.6.ls   1/1     232   271 .]     1    42 []    57.1  5.2e-14
PF07525.6.fs   1/1     232   271 .]     1    42 []    55.2    5e-16

Alignments of top-scoring domains:
PF00023.20.ls: domain 1 of 4, from 13 to 45: score 22.7, E = 0.0012
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +TPL +Aa  g+ ++v +L+ +GA+++++d    
    KIAA1146    13    LPCTPLRIAATAGHGSCVDFLIRKGAEVDLVDV    45   

PF00023.20.fs: domain 1 of 5, from 15 to 45: score 20.8, E = 8.2e-05
                   *->fTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +TPL +Aa  g+ ++v +L+ +GA+++++d    
    KIAA1146    15    CTPLRIAATAGHGSCVDFLIRKGAEVDLVDV    45   

PF00023.20.fs: domain 2 of 5, from 46 to 74: score 26.7, E = 1.9e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdln<-*
                       G+T+L +A+ +g+le  + Ll++GAd+n   
    KIAA1146    46    KGQTALYVAVVNGHLESTQILLEAGADPN    74   

PF00023.20.ls: domain 2 of 4, from 46 to 78: score 26.5, E = 8.7e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L +A+ +g+le  + Ll++GAd+n       
    KIAA1146    46    KGQTALYVAVVNGHLESTQILLEAGADPNGSRH    78   

PF00023.20.fs: domain 3 of 5, from 79 to 111: score 18.5, E = 0.00037
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +  TP  +A++ g+++++k L+ +GAd+++      
    KIAA1146    79    HRSTPVYHASRVGRADILKALIRYGADVDVNHH    111  

PF00023.20.ls: domain 3 of 4, from 79 to 111: score 20.5, E = 0.0058
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +  TP  +A++ g+++++k L+ +GAd+++      
    KIAA1146    79    HRSTPVYHASRVGRADILKALIRYGADVDVNHH    111  

PF00023.20.ls: domain 4 of 4, from 127 to 159: score 7.2, E = 2.6
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                          PL + a + nl++ +lLl +GA+++   +   
    KIAA1146   127    LVVCPLYISAAYHNLQCFRLLLLAGANPDFNCN    159  

PF00023.20.fs: domain 4 of 5, from 131 to 159: score 10.5, E = 0.059
                   *->PLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      PL + a + nl++ +lLl +GA+++   +   
    KIAA1146   131    PLYISAAYHNLQCFRLLLLAGANPDFNCN    159  

PF00023.20.fs: domain 5 of 5, from 176 to 204: score 4.2, E = 3.4
                   *->HlAalrg..nlevvklLlsqGAdlnaqdd<-*
                      + A+lr +  +  v+lL++ GA+ln++     
    KIAA1146   176    MDAVLRHgcEAAFVSLLVEFGANLNLVKW    204  

PF07525.6.ls: domain 1 of 1, from 232 to 271: score 57.1, E = 5.2e-14
                   *->prSLqhLCRlaIRrslgrdrlhlaikqLPLPprLkdYLleye<-*
                      pr+L  LCR+a+Rr+lg++rlhl i+ LPLP ++k++Ll +e   
    KIAA1146   232    PRTLLCLCRVAVRRALGKHRLHL-IPSLPLPDPIKKFLL-HE    271  

PF07525.6.fs: domain 1 of 1, from 232 to 271: score 55.2, E = 5e-16
                   *->prSLqhLCRlaIRrslgrdrlhlaikqLPLPprLkdYLleye<-*
                      pr+L  LCR+a+Rr+lg++rlhl i+ LPLP ++k++Ll +e   
    KIAA1146   232    PRTLLCLCRVAVRRALGKHRLHL-IPSLPLPDPIKKFLL-HE    271  

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