# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg00368.fasta.huge -Q ../query/KIAA1146.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1146, 271 aa vs ./tmplib.24314 library 1987234 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.3708+/-0.0043; mu= 13.4534+/- 0.292 mean_var=77.5610+/-19.078, 0's: 0 Z-trim: 26 B-trim: 0 in 0/40 Lambda= 0.145631 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1223 ( 1089 res) pg00513 (1089) 228 57.7 2.6e-09 KIAA0396 ( 627 res) hg00180s1 ( 627) 210 53.6 2.6e-08 KIAA1636 ( 1864 res) ff02660 (1864) 207 53.5 7.9e-08 KIAA0697 ( 2486 res) hk04486s1 (2486) 206 53.5 1.1e-07 KIAA1728 ( 1644 res) pg00239 (1644) 201 52.2 1.8e-07 KIAA0379 ( 1059 res) hh00505s1 (1059) 193 50.3 4.2e-07 KIAA1977 ( 606 res) fh18284(revised) ( 606) 188 48.9 6.2e-07 KIAA0946 ( 667 res) hj04787 ( 667) 188 49.0 6.6e-07 KIAA1785 ( 617 res) fh12727 ( 617) 187 48.7 7.2e-07 KIAA1876 ( 803 res) pf01162s1 ( 803) 183 48.0 1.5e-06 KIAA1758 ( 1662 res) fh20539(revised) (1662) 183 48.4 2.4e-06 KIAA1250 ( 1777 res) pf01137 (1777) 174 46.6 9.4e-06 KIAA0957 ( 693 res) hj05670 ( 693) 156 42.3 7.1e-05 KIAA1561 ( 1416 res) fh20178s1 (1416) 157 42.9 9.7e-05 KIAA1334 ( 989 res) fh15842 ( 989) 154 42.1 0.00012 KIAA1981 ( 862 res) fk03148(revised) ( 862) 150 41.1 0.0002 KIAA1074 ( 1715 res) hj06637 (1715) 152 41.9 0.00023 KIAA1139 ( 1124 res) hk00330 (1124) 150 41.3 0.00023 KIAA0823 ( 578 res) hh02763s1 ( 578) 146 40.1 0.00027 KIAA0041 ( 781 res) ha00469s1 ( 781) 136 38.2 0.0014 KIAA1323 ( 396 res) fh13878 ( 396) 129 36.3 0.0025 KIAA1716 ( 804 res) hj06603 ( 804) 126 36.1 0.0062 KIAA0229 ( 1180 res) ha02570 (1180) 127 36.5 0.0068 KIAA0838 ( 677 res) hk03864 ( 677) 124 35.6 0.0074 KIAA0050 ( 796 res) ha01557 ( 796) 123 35.4 0.0095 >>KIAA1223 ( 1089 res) pg00513 (1089 aa) initn: 228 init1: 228 opt: 228 Z-score: 258.9 bits: 57.7 E(): 2.6e-09 Smith-Waterman score: 232; 28.959% identity (54.751% similar) in 221 aa overlap (13-230:374-564) 10 20 30 40 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEVDL : . : . :. ::.: :..:: .::::: KIAA12 AAYMGHREIVEHLLDHGAEVNHEDVDGRTALSVAALCVPASKGHASVVSLLIDRGAEVDH 350 360 370 380 390 400 50 60 70 80 90 100 KIAA11 VDVKGQTALYVAVVNGHLESTQILLEAGADPNGSRHHRSTPVYHASRVGRADILKALIRY : :.: : ::. .::.. ...:::.::: . . .. ::. :. .:.:.....:. . KIAA12 CDKDGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDNNGRTPLLAAASMGHASVVNTLLFW 410 420 430 440 450 460 110 120 130 140 150 160 KIAA11 GADVDVNHHLTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNCNG-- :: :: . : . : : :..: :.. : :: : . . .. KIAA12 GAAVD-----SIDSEGRTV----------LSIASAQGNVEVVRTLLDRGLDENHRDDAGW 470 480 490 500 170 180 190 200 210 KIAA11 -PVNTQGFYRGSPGCVMDAVLRHGCEAAFVSLLVEFGANLNLVKWESLGPESRGRRKVDP :.. .: .: : ::: :.: :: : . .. : . .. KIAA12 TPLHMAAF-EGH---------RLICEA-----LIEQGARTNEIDNDGRIPFILASQEGHY 510 520 530 540 550 220 230 240 250 260 270 KIAA11 EALQVFKEARSVPRTLLCLCRVAVRRALGKHRLHLIPSLPLPDPIKKFLLHE . .:.. : .: KIAA12 DCVQILLENKSNIDQRGYDGRNALRVAALEGHRDIVELLFSHGADVNCKDADGRPTLYIL 560 570 580 590 600 610 >>KIAA0396 ( 627 res) hg00180s1 (627 aa) initn: 239 init1: 204 opt: 210 Z-score: 241.2 bits: 53.6 E(): 2.6e-08 Smith-Waterman score: 210; 36.000% identity (71.000% similar) in 100 aa overlap (16-114:123-222) 10 20 30 40 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEVDLVDV :::: : :. . : .:....:...... KIAA03 WCAAGAGHFEVVKLLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANK 100 110 120 130 140 150 50 60 70 80 90 100 KIAA11 KGQTALYVAVVNGHLESTQILLEAGADPNGSRHHRSTPVYHASRVGRADILKALIRYGAD .: :..:. .:: . .. ::: ::::.. : .: .. :...:. ::.: ::.. : KIAA03 YDNTCLMIAAYKGHTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAA 160 170 180 190 200 210 110 120 130 140 150 160 KIAA11 VDVNHH-LTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNCNGPVNT . :: : .:: KIAA03 IVVNGHGMTPLKVAAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIIKT 220 230 240 250 260 270 >>KIAA1636 ( 1864 res) ff02660 (1864 aa) initn: 203 init1: 203 opt: 207 Z-score: 232.4 bits: 53.5 E(): 7.9e-08 Smith-Waterman score: 207; 30.189% identity (56.132% similar) in 212 aa overlap (16-218:976-1179) 10 20 30 40 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEVDLVDV ::: .::. :: . ::::. .:: . :.: KIAA16 FSTVRQGHWQIVDLLLTHGADVNMADKQGRTPLMMAASEGHLGTVDFLLAQGASIALMDK 950 960 970 980 990 1000 50 60 70 80 90 100 KIAA11 KGQTALYVAVVNGHLESTQILLEAGADPNGSRHHRSTPVYHASRVGRADILKALIRYGAD .: ::: : ..::: .. :.. :: . . .. ::. :. : :.... :. .:: KIAA16 EGLTALSWACLKGHLSVVRSLVDNGAATDHADKNGRTPLDLAAFYGDAEVVQFLVDHGAM 1010 1020 1030 1040 1050 1060 110 120 130 140 150 160 KIAA11 VD-VNHHLTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNCN--GPV .. :.. .. . : ::.:: : .: .: ..::. . . KIAA16 IEHVDYSGMRPLDRAVGCRNTSVVVTLLKKGAKIGPAT----WAMATSKPDIMIILLSKL 1070 1080 1090 1100 1110 1120 170 180 190 200 210 KIAA11 NTQG--FYRGSPGCVMDAVLRHGCEAAFVSLLVE-FGANLNL---VKWESLGPESRGRRK .: ::. : : .:. :. . :. .. : :: .:. .: : :: ::: KIAA16 MEEGDMFYK--KGKVKEAAQRY--QYALKKFPREGFGEDLKTFRELKVSLLLNLSRCRRK 1130 1140 1150 1160 1170 220 230 240 250 260 270 KIAA11 VDPEALQVFKEARSVPRTLLCLCRVAVRRALGKHRLHLIPSLPLPDPIKKFLLHE .. KIAA16 MNDFGMAEEFATKALELKPKSYEAYYARARAKRSSRQFAAALEDLNEAIKLCPNNREIQR 1180 1190 1200 1210 1220 1230 >>KIAA0697 ( 2486 res) hk04486s1 (2486 aa) initn: 300 init1: 198 opt: 206 Z-score: 229.8 bits: 53.5 E(): 1.1e-07 Smith-Waterman score: 206; 37.209% identity (75.581% similar) in 86 aa overlap (16-101:1205-1290) 10 20 30 40 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEVDLVDV : : ::: :: . ..:: .::..:. . KIAA06 AASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNK 1180 1190 1200 1210 1220 1230 50 60 70 80 90 100 KIAA11 KGQTALYVAVVNGHLESTQILLEAGADPNGSRHHRSTPVYHASRVGRADILKALIRYGAD ::.: :..:. .:::. .:.:..:::: ... ... ::.. : : :.. ... :.. KIAA06 KGNTPLWLAANGGHLDVVQLLVQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQ 1240 1250 1260 1270 1280 1290 110 120 130 140 150 160 KIAA11 VDVNHHLTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNCNGPVNTQ KIAA06 FPSDSECMRYIATITDKEMLKKCHLCMESIVQAKDRQAAEANKNASILLEELDLEKLREE 1300 1310 1320 1330 1340 1350 >>KIAA1728 ( 1644 res) pg00239 (1644 aa) initn: 359 init1: 188 opt: 201 Z-score: 226.2 bits: 52.2 E(): 1.8e-07 Smith-Waterman score: 201; 34.921% identity (59.524% similar) in 126 aa overlap (16-140:930-1055) 10 20 30 40 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEVDLVDV ::: .:: :: : :.::. ::: .. .: KIAA17 FCAARQGHWQIVRLLLERGCDVNLSDKQGRTPLMVAACEGHLSTVEFLLSKGAALSSLDK 900 910 920 930 940 950 50 60 70 80 90 100 KIAA11 KGQTALYVAVVNGHLESTQILLEAGADPNGSRHHRSTPVYHASRVGRADILKALIRYGAD .: .:: : ..:: .: :.: :: . . .. ::. :. : :. . :.. :: KIAA17 EGLSALSWACLKGHRAVVQYLVEEGAAIDQTDKNGRTPLDLAAFYGDAETVLYLVEKGAV 960 970 980 990 1000 1010 110 120 130 140 150 160 KIAA11 VD-VNHHLTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNCNGPVNT .. :.: .. .. : ::.:: : .: : KIAA17 IEHVDHSGMRPLDRAIGCRNTSVVVALLRKGAKLGNAAWAMATSKPDILIILLQKLMEEG 1020 1030 1040 1050 1060 1070 170 180 190 200 210 220 KIAA11 QGFYRGSPGCVMDAVLRHGCEAAFVSLLVEFGANLNLVKWESLGPESRGRRKVDPEALQV KIAA17 NVMYKKGKMKEAAQRYQYALRKFPREGFGEDMRPFNELRVSLYLNLSRCRRKTNDFGMAE 1080 1090 1100 1110 1120 1130 >>KIAA0379 ( 1059 res) hh00505s1 (1059 aa) initn: 423 init1: 193 opt: 193 Z-score: 219.3 bits: 50.3 E(): 4.2e-07 Smith-Waterman score: 221; 28.500% identity (60.500% similar) in 200 aa overlap (16-196:280-477) 10 20 30 40 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGS-CVDFLIRKGAEVDLVD :::..::.. ::. :...:. .::.:.. . KIAA03 HVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGALCLELLVGNGADVNMKS 250 260 270 280 290 300 50 60 70 80 90 100 KIAA11 VKGQTALYVAVVNGHLESTQILLEAGADPNGSRHHRSTPVYHASRVGRADILKALIRYGA :.: :......:.. .: ....:: . .. .::.. :.: :. ....:: :: KIAA03 KDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGA 310 320 330 340 350 360 110 120 130 140 KIAA11 DVDVN--HHLTP---DVQPRFS---RRLTSL---VVCP-------LYISAAYHNLQCFRL :. : . : . :: :.: : . : :. .:: ::.:. : KIAA03 DTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNL 370 380 390 400 410 420 150 160 170 180 190 200 KIAA11 LLLAGANPDFNCNGPVNTQGFYRGSPGCVMDAVLRHGCEAAFVSLLVEFGANLNLVKWES :: .:: ::: . . . .. .. .: .. .. .: :. : : : KIAA03 LLNTGA--DFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATS 430 440 450 460 470 480 210 220 230 240 250 260 KIAA11 LGPESRGRRKVDPEALQVFKEARSVPRTLLCLCRVAVRRALGKHRLHLIPSLPLPDPIKK KIAA03 DTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDM 490 500 510 520 530 540 >>KIAA1977 ( 606 res) fh18284(revised) (606 aa) initn: 282 init1: 154 opt: 188 Z-score: 216.4 bits: 48.9 E(): 6.2e-07 Smith-Waterman score: 188; 32.990% identity (71.134% similar) in 97 aa overlap (16-111:54-150) 10 20 30 40 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEVDLVDV ::: .:.. :. : . ::...:::... :. KIAA19 MYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDI 30 40 50 60 70 80 50 60 70 80 90 100 KIAA11 KGQTALYVAVVNGHLESTQILLEAGADPNGSRHHRS-TPVYHASRVGRADILKALIRYGA .: :::. . :: . ...::..::. : . . ::...:. .:. :.. .. .:. KIAA19 QGWTALFHCTSAGHQHMVRFLLDSGANANVREPICGFTPLMEAAAAGHEIIVQYFLNHGV 90 100 110 120 130 140 110 120 130 140 150 160 KIAA11 DVDVNHHLTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNCNGPVNT ::. : KIAA19 KVDARDHSGATARMLAKQYGHMKIVALMDTYSPSLPKSLYRSPEKYEDLSSSDESCPAPQ 150 160 170 180 190 200 >>KIAA0946 ( 667 res) hj04787 (667 aa) initn: 197 init1: 117 opt: 188 Z-score: 215.9 bits: 49.0 E(): 6.6e-07 Smith-Waterman score: 188; 33.673% identity (71.429% similar) in 98 aa overlap (15-110:193-290) 10 20 30 40 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEVDLVD :. ...:: :: : : .:: :: .::..: KIAA09 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 170 180 190 200 210 220 50 60 70 80 90 100 KIAA11 VKGQTALYVAVVNGH-LESTQILLEAGADPN-GSRHHRSTPVYHASRVGRADILKALIRY .:.: :. :. : .. :..:: ... : :...:..: .. : .: . ... :.. KIAA09 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 230 240 250 260 270 280 110 120 130 140 150 160 KIAA11 GADVDVNHHLTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNCNGPV ::.::... KIAA09 GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDNPSFLRKLKADKEFRQKVML 290 300 310 320 330 340 >>KIAA1785 ( 617 res) fh12727 (617 aa) initn: 377 init1: 182 opt: 187 Z-score: 215.2 bits: 48.7 E(): 7.2e-07 Smith-Waterman score: 187; 34.000% identity (64.000% similar) in 100 aa overlap (16-114:118-217) 10 20 30 40 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEVDLVDV :::: : :: : .:... :.... . KIAA17 WAASAAGHLKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKADLEVSNR 90 100 110 120 130 140 50 60 70 80 90 100 KIAA11 KGQTALYVAVVNGHLESTQILLEAGADPNGSRHHRSTPVYHASRVGRADILKALIRYGAD .:.: :... .:: : .: ::: ::: : . . .: .. .. : ::.: :. : : KIAA17 HGHTCLMISCYKGHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKMLLMYCAK 150 160 170 180 190 200 110 120 130 140 150 160 KIAA11 VDVNHH-LTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNCNGPVNT .. . . .:: KIAA17 MEKDGYGMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALELLGATFVDKKRDLLGALK 210 220 230 240 250 260 >>KIAA1876 ( 803 res) pf01162s1 (803 aa) initn: 136 init1: 136 opt: 183 Z-score: 209.3 bits: 48.0 E(): 1.5e-06 Smith-Waterman score: 183; 36.000% identity (61.000% similar) in 100 aa overlap (10-108:421-520) 10 20 30 KIAA11 RINEKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAE :. ::: :: .: : .::. :: KIAA18 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 400 410 420 430 440 450 40 50 60 70 80 90 KIAA11 VDLVDVKGQTALYVAVVNGHLESTQILLEAGA-DPNGSRHHRSTPVYHASRVGRADILKA :: :..:.: :..:. .:: : .: :: : : : . ::. :.. ..:..: KIAA18 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 460 470 480 490 500 510 100 110 120 130 140 150 KIAA11 LIRYGADVDVNHHLTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNC :. :.:... KIAA18 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 520 530 540 550 560 570 271 residues in 1 query sequences 1987234 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:11:01 2008 done: Thu Dec 18 15:11:02 2008 Total Scan time: 0.310 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]