# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hj05565.fasta.nr -Q ../query/KIAA1144.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA1144, 489 aa
vs /cdna2/lib/nr/nr library
2693465022 residues in 7827732 sequences
statistics sampled from 60000 to 7822627 sequences
Expectation_n fit: rho(ln(x))= 4.6833+/-0.000179; mu= 13.7570+/- 0.010
mean_var=67.0114+/-13.203, 0's: 36 Z-trim: 64 B-trim: 0 in 0/66
Lambda= 0.156675
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7827732)
gi|24418481|sp|Q9ULS6.2|KCNS2_HUMAN RecName: Full= ( 477) 3168 725.1 9.6e-207
gi|109087045|ref|XP_001094800.1| PREDICTED: potass ( 477) 3161 723.5 2.9e-206
gi|194036997|ref|XP_001928892.1| PREDICTED: simila ( 477) 3149 720.8 1.9e-205
gi|119906727|ref|XP_592772.3| PREDICTED: similar t ( 477) 3141 719.0 6.6e-205
gi|73974094|ref|XP_539100.2| PREDICTED: similar to ( 510) 3139 718.6 9.5e-205
gi|24418461|sp|Q9ER26.1|KCNS2_RAT RecName: Full=Po ( 477) 3123 714.9 1.1e-203
gi|24418468|sp|O35174.1|KCNS2_MOUSE RecName: Full= ( 477) 3123 714.9 1.1e-203
gi|126322140|ref|XP_001369106.1| PREDICTED: simila ( 477) 2992 685.3 9.1e-195
gi|118087222|ref|XP_428021.2| PREDICTED: similar t ( 447) 2493 572.5 7.8e-161
gi|149622655|ref|XP_001514820.1| PREDICTED: simila ( 504) 2493 572.6 8.5e-161
gi|47217887|emb|CAG05009.1| unnamed protein produc ( 479) 2483 570.3 3.9e-160
gi|118100541|ref|XP_001232667.1| PREDICTED: simila ( 469) 1786 412.7 1e-112
gi|189520680|ref|XP_001922193.1| PREDICTED: simila ( 487) 1778 410.9 3.7e-112
gi|81897133|sp|Q8BQZ8.1|KCNS3_MOUSE RecName: Full= ( 491) 1710 395.6 1.6e-107
gi|148666013|gb|EDK98429.1| mCG1037961 [Mus muscul ( 491) 1710 395.6 1.6e-107
gi|109102073|ref|XP_001092885.1| PREDICTED: potass ( 491) 1707 394.9 2.5e-107
gi|24418459|sp|O88759.1|KCNS3_RAT RecName: Full=Po ( 491) 1706 394.7 3e-107
gi|149408753|ref|XP_001506624.1| PREDICTED: simila ( 494) 1705 394.4 3.5e-107
gi|50745143|ref|XP_426211.1| PREDICTED: similar to ( 494) 1704 394.2 4.1e-107
gi|62630224|gb|AAX88969.1| unknown [Homo sapiens] ( 491) 1703 394.0 4.7e-107
gi|160142685|sp|Q9BQ31.2|KCNS3_HUMAN RecName: Full ( 491) 1702 393.7 5.5e-107
gi|16198531|gb|AAH15947.1| Potassium voltage-gated ( 491) 1702 393.7 5.5e-107
gi|54697186|gb|AAV38965.1| potassium voltage-gated ( 492) 1702 393.7 5.6e-107
gi|2739121|gb|AAB94882.1| Shab-related delayed-rec ( 491) 1701 393.5 6.5e-107
gi|24418478|sp|Q9TT17.1|KCNS3_RABIT RecName: Full= ( 491) 1700 393.3 7.6e-107
gi|13278747|gb|AAH04148.1| Potassium voltage-gated ( 491) 1698 392.8 1e-106
gi|30584613|gb|AAP36559.1| Homo sapiens potassium ( 492) 1698 392.8 1e-106
gi|60652544|gb|AAX33295.1| potassium voltage-gated ( 491) 1697 392.6 1.2e-106
gi|67097562|gb|AAY67751.1| potassium voltage-gated ( 491) 1696 392.4 1.4e-106
gi|126305418|ref|XP_001362177.1| PREDICTED: simila ( 492) 1687 390.4 5.8e-106
gi|57098457|ref|XP_540095.1| PREDICTED: similar to ( 491) 1686 390.1 6.8e-106
gi|194220944|ref|XP_001918281.1| PREDICTED: simila ( 491) 1681 389.0 1.5e-105
gi|189543121|ref|XP_699543.3| PREDICTED: similar t ( 379) 1568 363.4 6e-98
gi|190337460|gb|AAI63398.1| Similar to potassium v ( 499) 1537 356.5 9.5e-96
gi|47210943|emb|CAF91112.1| unnamed protein produc ( 487) 1493 346.5 9.2e-93
gi|47212422|emb|CAF93578.1| unnamed protein produc ( 697) 1355 315.4 2.9e-83
gi|81097675|gb|AAI09402.1| Zgc:123261 [Danio rerio ( 424) 1268 295.6 1.7e-77
gi|55962430|emb|CAI11829.1| novel protein similar ( 416) 1264 294.7 3.1e-77
gi|56207944|emb|CAI21201.1| novel protein similar ( 494) 1077 252.5 1.9e-64
gi|109129350|ref|XP_001112505.1| PREDICTED: potass ( 519) 1009 237.1 8.2e-60
gi|80479036|gb|AAI09204.1| Potassium voltage-gated ( 519) 1004 236.0 1.8e-59
gi|109111683|ref|XP_001086960.1| PREDICTED: simila ( 545) 1004 236.0 1.9e-59
gi|26006803|sp|Q8TDN1.1|KCNG4_HUMAN RecName: Full= ( 519) 1002 235.5 2.5e-59
gi|119615894|gb|EAW95488.1| potassium voltage-gate ( 539) 1002 235.6 2.5e-59
gi|114663882|ref|XP_523443.2| PREDICTED: potassium ( 519) 997 234.4 5.4e-59
gi|114623626|ref|XP_528530.2| PREDICTED: potassium ( 545) 995 234.0 7.7e-59
gi|26006804|sp|Q8TDN2.1|KCNV2_HUMAN RecName: Full= ( 545) 989 232.6 2e-58
gi|149042788|gb|EDL96362.1| potassium voltage-gate ( 514) 984 231.5 4.1e-58
gi|125827081|ref|XP_695650.2| PREDICTED: hypotheti ( 518) 981 230.8 6.6e-58
gi|187595284|sp|A2BDX4.1|KCNG1_MOUSE RecName: Full ( 514) 979 230.3 9e-58
>>gi|24418481|sp|Q9ULS6.2|KCNS2_HUMAN RecName: Full=Pota (477 aa)
initn: 3168 init1: 3168 opt: 3168 Z-score: 3867.9 bits: 725.1 E(): 9.6e-207
Smith-Waterman score: 3168; 100.000% identity (100.000% similar) in 477 aa overlap (13-489:1-477)
10 20 30 40 50 60
KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 MTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
10 20 30 40
70 80 90 100 110 120
KIAA11 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
50 60 70 80 90 100
130 140 150 160 170 180
KIAA11 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
110 120 130 140 150 160
190 200 210 220 230 240
KIAA11 FRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 FRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
170 180 190 200 210 220
250 260 270 280 290 300
KIAA11 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
230 240 250 260 270 280
310 320 330 340 350 360
KIAA11 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
290 300 310 320 330 340
370 380 390 400 410 420
KIAA11 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
350 360 370 380 390 400
430 440 450 460 470 480
KIAA11 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
410 420 430 440 450 460
KIAA11 ELSLNDSLR
:::::::::
gi|244 ELSLNDSLR
470
>>gi|109087045|ref|XP_001094800.1| PREDICTED: potassium (477 aa)
initn: 3161 init1: 3161 opt: 3161 Z-score: 3859.4 bits: 723.5 E(): 2.9e-206
Smith-Waterman score: 3161; 100.000% identity (100.000% similar) in 476 aa overlap (13-488:1-476)
10 20 30 40 50 60
KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 MTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
10 20 30 40
70 80 90 100 110 120
KIAA11 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
50 60 70 80 90 100
130 140 150 160 170 180
KIAA11 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
110 120 130 140 150 160
190 200 210 220 230 240
KIAA11 FRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 FRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
170 180 190 200 210 220
250 260 270 280 290 300
KIAA11 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
230 240 250 260 270 280
310 320 330 340 350 360
KIAA11 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
290 300 310 320 330 340
370 380 390 400 410 420
KIAA11 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
350 360 370 380 390 400
430 440 450 460 470 480
KIAA11 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
410 420 430 440 450 460
KIAA11 ELSLNDSLR
::::::::
gi|109 ELSLNDSLH
470
>>gi|194036997|ref|XP_001928892.1| PREDICTED: similar to (477 aa)
initn: 3149 init1: 3149 opt: 3149 Z-score: 3844.7 bits: 720.8 E(): 1.9e-205
Smith-Waterman score: 3149; 99.370% identity (100.000% similar) in 476 aa overlap (13-488:1-476)
10 20 30 40 50 60
KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 MTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
10 20 30 40
70 80 90 100 110 120
KIAA11 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
50 60 70 80 90 100
130 140 150 160 170 180
KIAA11 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
110 120 130 140 150 160
190 200 210 220 230 240
KIAA11 FRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
::::::::::::::::::::::.::::::.:::::::::::::::::::::.::::::::
gi|194 FRRQLWLALDNPGYSVLSRVFSVLSILVVLGSIITMCLNSLPDFQIPDSQGTPGEDPRFE
170 180 190 200 210 220
250 260 270 280 290 300
KIAA11 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
230 240 250 260 270 280
310 320 330 340 350 360
KIAA11 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
290 300 310 320 330 340
370 380 390 400 410 420
KIAA11 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
350 360 370 380 390 400
430 440 450 460 470 480
KIAA11 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
410 420 430 440 450 460
KIAA11 ELSLNDSLR
::::::::
gi|194 ELSLNDSLH
470
>>gi|119906727|ref|XP_592772.3| PREDICTED: similar to Po (477 aa)
initn: 3141 init1: 3141 opt: 3141 Z-score: 3834.9 bits: 719.0 E(): 6.6e-205
Smith-Waterman score: 3141; 98.950% identity (99.790% similar) in 476 aa overlap (13-488:1-476)
10 20 30 40 50 60
KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
:::::::::::::::::::::::::::.::::::::::::::::::::
gi|119 MTGQSLWDVSEANVEDGEIRINVGGFKKRLRSHTLLRFPETRLGRLLL
10 20 30 40
70 80 90 100 110 120
KIAA11 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
gi|119 CHSREAILELCDDYDDAQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
50 60 70 80 90 100
130 140 150 160 170 180
KIAA11 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
110 120 130 140 150 160
190 200 210 220 230 240
KIAA11 FRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
::::::::::::::::::::::.::::::.:::::::::::::::::: :::::::::::
gi|119 FRRQLWLALDNPGYSVLSRVFSVLSILVVLGSIITMCLNSLPDFQIPDRQGNPGEDPRFE
170 180 190 200 210 220
250 260 270 280 290 300
KIAA11 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
230 240 250 260 270 280
310 320 330 340 350 360
KIAA11 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
290 300 310 320 330 340
370 380 390 400 410 420
KIAA11 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
350 360 370 380 390 400
430 440 450 460 470 480
KIAA11 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
410 420 430 440 450 460
KIAA11 ELSLNDSLR
::::::::
gi|119 ELSLNDSLH
470
>>gi|73974094|ref|XP_539100.2| PREDICTED: similar to Pot (510 aa)
initn: 3139 init1: 3139 opt: 3139 Z-score: 3832.1 bits: 718.6 E(): 9.5e-205
Smith-Waterman score: 3139; 96.509% identity (99.179% similar) in 487 aa overlap (1-487:22-508)
10 20 30
KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFK
: ::::: :::::: .: ::..::::::::::.:::::.
gi|739 MPTSRSGKFPAGLGRGPPCSQRRRAARAPGASSMTRRSPWDANEANVEDGEIRVNVGGFR
10 20 30 40 50 60
40 50 60 70 80 90
KIAA11 RRLRSHTLLRFPETRLGRLLLCHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHT
::::::::::::::::::::::.::::::::::::::.::::::::::::::::::::::
gi|739 RRLRSHTLLRFPETRLGRLLLCRSREAILELCDDYDDAQREFYFDRNPELFPYVLHFYHT
70 80 90 100 110 120
100 110 120 130 140 150
KIAA11 GKLHVMAELCVFSFSQEIEYWGINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|739 GKLHVMAELCVFSFSQEIEYWGINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSS
130 140 150 160 170 180
160 170 180 190 200 210
KIAA11 FDEILAFYNDASKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLN
::::::::.:::::::::::::::::::::::::::::::.::.::::::.:::::::::
gi|739 FDEILAFYSDASKFDGQPLGNFRRQLWLALDNPGYSVLSRIFSVLSILVVLGSIITMCLN
190 200 210 220 230 240
220 230 240 250 260 270
KIAA11 SLPDFQIPDSQGNPGEDPRFEIVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|739 SLPDFQIPDSQGNPGEDPRFEIVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMS
250 260 270 280 290 300
280 290 300 310 320 330
KIAA11 IVPFYITLVVNLVVESTPTLANLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|739 IVPFYITLVVNLVVESTPTLANLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYK
310 320 330 340 350 360
340 350 360 370 380 390
KIAA11 EVGLLLLYLSVGISIFSVVAYTIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAG
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
gi|739 EVGLLLLYLSVGISIFSVVAYTIEKEENEGLTTIPACWWWATVSMTTVGYGDVVPGTTAG
370 380 390 400 410 420
400 410 420 430 440 450
KIAA11 KLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
gi|739 KLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSINLRDY
430 440 450 460 470 480
460 470 480
KIAA11 YAHKVKSLMASLTNMSRSSPSELSLNDSLR
::::::::::::::::::::::::::::
gi|739 YAHKVKSLMASLTNMSRSSPSELSLNDSPH
490 500 510
>>gi|24418461|sp|Q9ER26.1|KCNS2_RAT RecName: Full=Potass (477 aa)
initn: 3123 init1: 3123 opt: 3123 Z-score: 3812.9 bits: 714.9 E(): 1.1e-203
Smith-Waterman score: 3123; 98.319% identity (99.790% similar) in 476 aa overlap (13-488:1-476)
10 20 30 40 50 60
KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
:: :::::.::..:::::::::::::::::::::::::::::::::::
gi|244 MTRQSLWDLSETDVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
10 20 30 40
70 80 90 100 110 120
KIAA11 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
50 60 70 80 90 100
130 140 150 160 170 180
KIAA11 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
110 120 130 140 150 160
190 200 210 220 230 240
KIAA11 FRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
::::::::::::::::::::::.::::::.::::::::::::::::::::::::::::::
gi|244 FRRQLWLALDNPGYSVLSRVFSVLSILVVLGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
170 180 190 200 210 220
250 260 270 280 290 300
KIAA11 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
gi|244 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESSPTLA
230 240 250 260 270 280
310 320 330 340 350 360
KIAA11 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
290 300 310 320 330 340
370 380 390 400 410 420
KIAA11 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
350 360 370 380 390 400
430 440 450 460 470 480
KIAA11 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
410 420 430 440 450 460
KIAA11 ELSLNDSLR
::::.:::
gi|244 ELSLDDSLH
470
>>gi|24418468|sp|O35174.1|KCNS2_MOUSE RecName: Full=Pota (477 aa)
initn: 3123 init1: 3123 opt: 3123 Z-score: 3812.9 bits: 714.9 E(): 1.1e-203
Smith-Waterman score: 3123; 98.319% identity (99.790% similar) in 476 aa overlap (13-488:1-476)
10 20 30 40 50 60
KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
:: :::::::...:::::::::::::::::::::::::::::::::::
gi|244 MTRQSLWDVSDTDVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
10 20 30 40
70 80 90 100 110 120
KIAA11 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
50 60 70 80 90 100
130 140 150 160 170 180
KIAA11 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
110 120 130 140 150 160
190 200 210 220 230 240
KIAA11 FRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
::::::::::::::::::::::.::::::.::::::::::::::::::::::::::::::
gi|244 FRRQLWLALDNPGYSVLSRVFSVLSILVVLGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
170 180 190 200 210 220
250 260 270 280 290 300
KIAA11 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
gi|244 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESSPTLA
230 240 250 260 270 280
310 320 330 340 350 360
KIAA11 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
290 300 310 320 330 340
370 380 390 400 410 420
KIAA11 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
350 360 370 380 390 400
430 440 450 460 470 480
KIAA11 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|244 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
410 420 430 440 450 460
KIAA11 ELSLNDSLR
::::.:::
gi|244 ELSLDDSLH
470
>>gi|126322140|ref|XP_001369106.1| PREDICTED: similar to (477 aa)
initn: 2992 init1: 2992 opt: 2992 Z-score: 3652.9 bits: 685.3 E(): 9.1e-195
Smith-Waterman score: 2992; 93.697% identity (98.529% similar) in 476 aa overlap (13-488:1-476)
10 20 30 40 50 60
KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
:::::: :.:::: ::.:: .::::::..::::::::::::::::::
gi|126 MTGQSLSDLSEANFEDSEISVNVGGFKKKLRSHTLLRFPETRLGRLLH
10 20 30 40
70 80 90 100 110 120
KIAA11 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
:.:.:.::::::::::.: ::::::::::::::::::.:::::::.::::::::::::::
gi|126 CRSKESILELCDDYDDAQNEFYFDRNPELFPYVLHFYNTGKLHVMGELCVFSFSQEIEYW
50 60 70 80 90 100
130 140 150 160 170 180
KIAA11 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
:::::::::::::::::::.::.:::::::::::::::::::::::::::::::::::::
gi|126 GINEFFIDSCCSYSYHGRKMEPDQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
110 120 130 140 150 160
190 200 210 220 230 240
KIAA11 FRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGEDPRFE
.::::::::::::::.::::::::::.::.:::.:::::::::: :::::::: ::::::
gi|126 LRRQLWLALDNPGYSILSRVFSILSIMVVLGSIVTMCLNSLPDFLIPDSQGNPEEDPRFE
170 180 190 200 210 220
250 260 270 280 290 300
KIAA11 IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLA
::::::::::::::::::::.:.:.:::::::::::::::.::::::::::::::.::::
gi|126 IVEHFGIAWFTFELVARFAVTPEFFKFFKNALNLIDLMSIIPFYITLVVNLVVESSPTLA
230 240 250 260 270 280
310 320 330 340 350 360
KIAA11 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|126 NLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAY
290 300 310 320 330 340
370 380 390 400 410 420
KIAA11 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|126 TIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITL
350 360 370 380 390 400
430 440 450 460 470 480
KIAA11 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|126 IFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPS
410 420 430 440 450 460
KIAA11 ELSLNDSLR
::::::::
gi|126 ELSLNDSLH
470
>>gi|118087222|ref|XP_428021.2| PREDICTED: similar to po (447 aa)
initn: 2492 init1: 2492 opt: 2493 Z-score: 3043.7 bits: 572.5 E(): 7.8e-161
Smith-Waterman score: 2493; 88.732% identity (95.775% similar) in 426 aa overlap (64-488:21-446)
40 50 60 70 80 90
KIAA11 NVGGFKRRLRSHTLLRFPETRLGRLLLCHSREAILELCDDYDDVQREFYFDR-NPELFPY
:: :. . . ..: .. :::::::
gi|118 MEGRGAGSRRGEVGEEKRKEREMEREMGEKESREKKEREREKGNPELFPY
10 20 30 40 50
100 110 120 130 140 150
KIAA11 VLHFYHTGKLHVMAELCVFSFSQEIEYWGINEFFIDSCCSYSYHGRKVEPEQEKWDEQSD
:::::.:::::: .:: ::::::::::::::::::::::::::::::.::.::::.::::
gi|118 VLHFYNTGKLHVRGELRVFSFSQEIEYWGINEFFIDSCCSYSYHGRKMEPDQEKWEEQSD
60 70 80 90 100 110
160 170 180 190 200 210
KIAA11 QESTTSSFDEILAFYNDASKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSILSILVVMGS
:::::::::::::::::::::: ::.::.::::::::::::::::::.::.:::.::.::
gi|118 QESTTSSFDEILAFYNDASKFDKQPFGNIRRQLWLALDNPGYSVLSRIFSVLSIVVVLGS
120 130 140 150 160 170
220 230 240 250 260 270
KIAA11 IITMCLNSLPDFQIPDSQGNPGEDPRFEIVEHFGIAWFTFELVARFAVAPDFLKFFKNAL
:.::::::: :::: ::.:.: ::::::::::::::::::::::::::::::::::..::
gi|118 IVTMCLNSLSDFQIIDSSGTPEEDPRFEIVEHFGIAWFTFELVARFAVAPDFLKFFQHAL
180 190 200 210 220 230
280 290 300 310 320 330
KIAA11 NLIDLMSIVPFYITLVVNLVVESTPTLANLGRVAQVLRLMRIFRILKLARHSTGLRSLGA
::::::::.::::::.:::::::.::::::::::::::::::::::::::::::::::::
gi|118 NLIDLMSILPFYITLIVNLVVESSPTLANLGRVAQVLRLMRIFRILKLARHSTGLRSLGA
240 250 260 270 280 290
340 350 360 370 380 390
KIAA11 TLKYSYKEVGLLLLYLSVGISIFSVVAYTIEKEENEGLATIPACWWWATVSMTTVGYGDV
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|118 TLKYSYREVGLLLLYLSVGISIFSVVAYTIEKEENEGLATIPACWWWATVSMTTVGYGDV
300 310 320 330 340 350
400 410 420 430 440 450
KIAA11 VPGTTAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGDGMKEVP
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|118 VPGSTAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGDGMKEVP
360 370 380 390 400 410
460 470 480
KIAA11 SVNLRDYYAHKVKSLMASLTNMSRSSPSELSLNDSLR
:::::::::.:::::::::::::::.::::::::::
gi|118 SVNLRDYYAYKVKSLMASLTNMSRSTPSELSLNDSLH
420 430 440
>>gi|149622655|ref|XP_001514820.1| PREDICTED: similar to (504 aa)
initn: 2000 init1: 2000 opt: 2493 Z-score: 3043.0 bits: 572.6 E(): 8.5e-161
Smith-Waterman score: 2493; 79.406% identity (92.994% similar) in 471 aa overlap (20-488:35-503)
10 20 30 40
KIAA11 RPRAARAAGASSMTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLR
:::... .::: :::::.:..: .:.::
gi|149 TGGGPVLQLCTTLSAVHNGFVVHALLSTRQDVSQTEQAEGEICINVGGLKQKLLPRTVLR
10 20 30 40 50 60
50 60 70 80 90 100
KIAA11 FPETRLGRLLLCHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELC
:::::::::: : :: ::::::::::: : :.::::.:.:::::::::.:::::: ..::
gi|149 FPETRLGRLLRCGSRAAILELCDDYDDSQGEYYFDRDPRLFPYVLHFYRTGKLHVTGQLC
70 80 90 100 110 120
110 120 130 140 150 160
KIAA11 VFSFSQEIEYWGINEFFIDSCCSYSYHGRKVEPEQ--EKWDEQSDQESTTSSFDEILAFY
:::::::::::::.:. ::.::. .:.:::.:: ..:...:..::..:::::.::::
gi|149 VFSFSQEIEYWGIDELSIDACCGPGYRGRKTEPTAGPDRWEDRSERESAASSFDELLAFY
130 140 150 160 170 180
170 180 190 200 210 220
KIAA11 NDASKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIP
:::.:::.::: .::.::::::::: :: ::.:..::.:::.:::.::::::::::. :
gi|149 RDASRFDGRPLGRLRRRLWLALDNPGRSVPSRAFGVLSVLVVLGSIVTMCLNSLPDFR-P
190 200 210 220 230 240
230 240 250 260 270 280
KIAA11 DSQGNPGEDPRFEIVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITL
. : ::::::: ::.::::::::::.::::::::: .::.::::::::.::::::.::
gi|149 -AGGRAGEDPRFEAVERFGIAWFTFELLARFAVAPDFSRFFRNALNLIDLLSIVPFYVTL
250 260 270 280 290 300
290 300 310 320 330 340
KIAA11 VVNLVVESTPTLANLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLY
.::::.::.:.::::::::::::::::::::::::::::::::::::::::.::::::::
gi|149 AVNLVAESSPALANLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYREVGLLLLY
310 320 330 340 350 360
350 360 370 380 390 400
KIAA11 LSVGISIFSVVAYTIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACI
::::::::::::::.:.:..:::::::::::::::::::::::::::::.::::::::::
gi|149 LSVGISIFSVVAYTVEREDDEGLATIPACWWWATVSMTTVGYGDVVPGTAAGKLTASACI
370 380 390 400 410 420
410 420 430 440 450 460
KIAA11 LAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSL
::::::::::::::::::::::::::::::::::: :::: :::::::::::: .::::
gi|149 LAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCRFGDGTGEVPSVNLRDYYACRVKSL
430 440 450 460 470 480
470 480
KIAA11 MASLTNMSRSSPSELSLNDSLR
:::::..: ::::::::.:::
gi|149 MASLTDVSGSSPSELSLSDSLD
490 500
489 residues in 1 query sequences
2693465022 residues in 7827732 library sequences
Tcomplib [34.26] (8 proc)
start: Tue Mar 3 22:03:13 2009 done: Tue Mar 3 22:07:46 2009
Total Scan time: 1562.860 Total Display time: 0.190
Function used was FASTA [version 34.26.5 April 26, 2007]