hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18314566/chunk_1/iprscan-20080501-18314566.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1141 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 477.2 8e-139 20 SM00349 21.7 0.0093 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 49 107 .. 1 62 [] 21.7 0.0093 SM00355 1/20 252 274 .. 1 23 [] 27.1 0.0024 SM00355 2/20 308 329 .. 1 23 [] 1.4 2.2e+02 SM00355 3/20 363 385 .. 1 23 [] 28.5 0.00092 SM00355 4/20 390 412 .. 1 23 [] 25.4 0.0076 SM00355 5/20 418 440 .. 1 23 [] 19.9 0.36 SM00355 6/20 446 468 .. 1 23 [] 14.6 7.1 SM00355 7/20 474 496 .. 1 23 [] 28.1 0.0012 SM00355 8/20 502 524 .. 1 23 [] 23.5 0.03 SM00355 9/20 530 552 .. 1 23 [] 25.6 0.007 SM00355 10/20 558 580 .. 1 23 [] 15.9 5.1 SM00355 11/20 605 627 .. 1 23 [] 22.2 0.072 SM00355 12/20 634 656 .. 1 23 [] 27.2 0.0023 SM00355 13/20 689 711 .. 1 23 [] 27.4 0.0019 SM00355 14/20 717 739 .. 1 23 [] 29.4 0.00051 SM00355 15/20 745 767 .. 1 23 [] 26.5 0.0038 SM00355 16/20 773 795 .. 1 23 [] 28.3 0.001 SM00355 17/20 801 823 .. 1 23 [] 26.0 0.0053 SM00355 18/20 829 851 .. 1 23 [] 30.7 0.0002 SM00355 19/20 857 879 .. 1 23 [] 28.2 0.0011 SM00355 20/20 885 907 .. 1 23 [] 21.3 0.13 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 49 to 107: score 21.7, E = 0.0093 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk Vt++DV +dF+ WeqL Q + ++d+ l+N+ L+ L+ ++ + KIAA1141 49 VTLKDVGMDFTLGDWEQLGLEQGDTFWDTALDNCQDLFLLD-PPRP- 93 pdliskLEqgeEpwi<-* l s e ++ KIAA1141 94 -NLTSHPDGSEDLEP 107 SM00355: domain 1 of 20, from 252 to 274: score 27.1, E = 0.0024 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs L++H +H KIAA1141 252 YQCSE-CGKSFSGSyRLTQHWITH 274 SM00355: domain 2 of 20, from 308 to 329: score 1.4, E = 2.2e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ ++ s++ + H+++H KIAA1141 308 YVCNE--YGTTFSQsTYLWHQKTH 329 SM00355: domain 3 of 20, from 363 to 385: score 28.5, E = 0.00092 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f++ +L+rH+++H KIAA1141 363 YNCNE-CGKAFTRIfHLTRHQKIH 385 SM00355: domain 4 of 20, from 390 to 412: score 25.4, E = 0.0076 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+ +f+ +++L++H+++H KIAA1141 390 YECSK-CQATFNLRkHLIQHQKTH 412 SM00355: domain 5 of 20, from 418 to 440: score 19.9, E = 0.36 *->ykCpigCgksfssk.aLkrHmrvH<-* +C++ Cgk f++ + L++H+ H KIAA1141 418 SECQE-CGKIFRHSsLLIEHQALH 440 SM00355: domain 6 of 20, from 446 to 468: score 14.6, E = 7.1 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ gksf++ + Lk H+rvH KIAA1141 446 YKCNE-RGKSFRHNsTLKIHQRVH 468 SM00355: domain 7 of 20, from 474 to 496: score 28.1, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+++++L++H r+H KIAA1141 474 YKCSE-CGKAFHRHtHLNEHRRIH 496 SM00355: domain 8 of 20, from 502 to 524: score 23.5, E = 0.03 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C +sfs++++L rH+ +H KIAA1141 502 HKCQE-CVRSFSRPsHLMRHQAIH 524 SM00355: domain 9 of 20, from 530 to 552: score 25.6, E = 0.007 *->ykCpigCgksfssk.aLkrHmrvH<-* y C + C+++fs+ + L++H+++H KIAA1141 530 YSCAE-CKETFSDNnRLVQHQKMH 552 SM00355: domain 10 of 20, from 558 to 580: score 15.9, E = 5.1 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg++f + Lk H vH KIAA1141 558 YECQE-CGERFICGsTLKCHESVH 580 SM00355: domain 11 of 20, from 605 to 627: score 22.2, E = 0.072 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C k+fs + L++H r+H KIAA1141 605 FKCNK-CEKTFSCSkYLTQHERIH 627 SM00355: domain 12 of 20, from 634 to 656: score 27.2, E = 0.0023 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f + + L++H+r+H KIAA1141 634 FECDQ-CGKAFGQStRLIHHQRIH 656 SM00355: domain 13 of 20, from 689 to 711: score 27.4, E = 0.0019 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk+fs+ +L +H+ +H KIAA1141 689 FKCNE-CGKTFSHSaHLSKHQLIH 711 SM00355: domain 14 of 20, from 717 to 739: score 29.4, E = 0.00051 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+++f++++ L++H r+H KIAA1141 717 FKCSK-CDRVFTQRnYLVQHERTH 739 SM00355: domain 15 of 20, from 745 to 767: score 26.5, E = 0.0038 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk+f++ + L +H+r+H KIAA1141 745 LVCNE-CGKTFRQSsCLSKHQRIH 767 SM00355: domain 16 of 20, from 773 to 795: score 28.3, E = 0.001 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f +L+rH+r+H KIAA1141 773 YVCDY-CGKAFGLSaELVRHQRIH 795 SM00355: domain 17 of 20, from 801 to 823: score 26.0, E = 0.0053 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ + L H rvH KIAA1141 801 YVCQE-CGKAFTQSsCLSIHRRVH 823 SM00355: domain 18 of 20, from 829 to 851: score 30.7, E = 0.0002 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk f +k +L++H+r+H KIAA1141 829 YRCGE-CGKAFAQKaNLTQHQRIH 851 SM00355: domain 19 of 20, from 857 to 879: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f +L++H+rvH KIAA1141 857 YSCNV-CGKAFVLSaHLNQHLRVH 879 SM00355: domain 20 of 20, from 885 to 907: score 21.3, E = 0.13 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ C+k f+ +++L rH+rvH KIAA1141 885 YQCQR-CQKAFRCHsSLSRHQRVH 907 //