hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18314566/chunk_1/iprscan-20080501-18314566.nocrc
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Query sequence: KIAA1141
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00355 477.2 8e-139 20
SM00349 21.7 0.0093 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00349 1/1 49 107 .. 1 62 [] 21.7 0.0093
SM00355 1/20 252 274 .. 1 23 [] 27.1 0.0024
SM00355 2/20 308 329 .. 1 23 [] 1.4 2.2e+02
SM00355 3/20 363 385 .. 1 23 [] 28.5 0.00092
SM00355 4/20 390 412 .. 1 23 [] 25.4 0.0076
SM00355 5/20 418 440 .. 1 23 [] 19.9 0.36
SM00355 6/20 446 468 .. 1 23 [] 14.6 7.1
SM00355 7/20 474 496 .. 1 23 [] 28.1 0.0012
SM00355 8/20 502 524 .. 1 23 [] 23.5 0.03
SM00355 9/20 530 552 .. 1 23 [] 25.6 0.007
SM00355 10/20 558 580 .. 1 23 [] 15.9 5.1
SM00355 11/20 605 627 .. 1 23 [] 22.2 0.072
SM00355 12/20 634 656 .. 1 23 [] 27.2 0.0023
SM00355 13/20 689 711 .. 1 23 [] 27.4 0.0019
SM00355 14/20 717 739 .. 1 23 [] 29.4 0.00051
SM00355 15/20 745 767 .. 1 23 [] 26.5 0.0038
SM00355 16/20 773 795 .. 1 23 [] 28.3 0.001
SM00355 17/20 801 823 .. 1 23 [] 26.0 0.0053
SM00355 18/20 829 851 .. 1 23 [] 30.7 0.0002
SM00355 19/20 857 879 .. 1 23 [] 28.2 0.0011
SM00355 20/20 885 907 .. 1 23 [] 21.3 0.13
Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 49 to 107: score 21.7, E = 0.0093
*->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
Vt++DV +dF+ WeqL Q + ++d+ l+N+ L+ L+ ++ +
KIAA1141 49 VTLKDVGMDFTLGDWEQLGLEQGDTFWDTALDNCQDLFLLD-PPRP- 93
pdliskLEqgeEpwi<-*
l s e ++
KIAA1141 94 -NLTSHPDGSEDLEP 107
SM00355: domain 1 of 20, from 252 to 274: score 27.1, E = 0.0024
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C++ Cgksfs L++H +H
KIAA1141 252 YQCSE-CGKSFSGSyRLTQHWITH 274
SM00355: domain 2 of 20, from 308 to 329: score 1.4, E = 2.2e+02
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C++ ++ s++ + H+++H
KIAA1141 308 YVCNE--YGTTFSQsTYLWHQKTH 329
SM00355: domain 3 of 20, from 363 to 385: score 28.5, E = 0.00092
*->ykCpigCgksfssk.aLkrHmrvH<-*
y C++ Cgk f++ +L+rH+++H
KIAA1141 363 YNCNE-CGKAFTRIfHLTRHQKIH 385
SM00355: domain 4 of 20, from 390 to 412: score 25.4, E = 0.0076
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C++ C+ +f+ +++L++H+++H
KIAA1141 390 YECSK-CQATFNLRkHLIQHQKTH 412
SM00355: domain 5 of 20, from 418 to 440: score 19.9, E = 0.36
*->ykCpigCgksfssk.aLkrHmrvH<-*
+C++ Cgk f++ + L++H+ H
KIAA1141 418 SECQE-CGKIFRHSsLLIEHQALH 440
SM00355: domain 6 of 20, from 446 to 468: score 14.6, E = 7.1
*->ykCpigCgksfssk.aLkrHmrvH<-*
ykC++ gksf++ + Lk H+rvH
KIAA1141 446 YKCNE-RGKSFRHNsTLKIHQRVH 468
SM00355: domain 7 of 20, from 474 to 496: score 28.1, E = 0.0012
*->ykCpigCgksfssk.aLkrHmrvH<-*
ykC++ Cgk f+++++L++H r+H
KIAA1141 474 YKCSE-CGKAFHRHtHLNEHRRIH 496
SM00355: domain 8 of 20, from 502 to 524: score 23.5, E = 0.03
*->ykCpigCgksfssk.aLkrHmrvH<-*
+kC++ C +sfs++++L rH+ +H
KIAA1141 502 HKCQE-CVRSFSRPsHLMRHQAIH 524
SM00355: domain 9 of 20, from 530 to 552: score 25.6, E = 0.007
*->ykCpigCgksfssk.aLkrHmrvH<-*
y C + C+++fs+ + L++H+++H
KIAA1141 530 YSCAE-CKETFSDNnRLVQHQKMH 552
SM00355: domain 10 of 20, from 558 to 580: score 15.9, E = 5.1
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C++ Cg++f + Lk H vH
KIAA1141 558 YECQE-CGERFICGsTLKCHESVH 580
SM00355: domain 11 of 20, from 605 to 627: score 22.2, E = 0.072
*->ykCpigCgksfssk.aLkrHmrvH<-*
+kC++ C k+fs + L++H r+H
KIAA1141 605 FKCNK-CEKTFSCSkYLTQHERIH 627
SM00355: domain 12 of 20, from 634 to 656: score 27.2, E = 0.0023
*->ykCpigCgksfssk.aLkrHmrvH<-*
++C++ Cgk f + + L++H+r+H
KIAA1141 634 FECDQ-CGKAFGQStRLIHHQRIH 656
SM00355: domain 13 of 20, from 689 to 711: score 27.4, E = 0.0019
*->ykCpigCgksfssk.aLkrHmrvH<-*
+kC++ Cgk+fs+ +L +H+ +H
KIAA1141 689 FKCNE-CGKTFSHSaHLSKHQLIH 711
SM00355: domain 14 of 20, from 717 to 739: score 29.4, E = 0.00051
*->ykCpigCgksfssk.aLkrHmrvH<-*
+kC++ C+++f++++ L++H r+H
KIAA1141 717 FKCSK-CDRVFTQRnYLVQHERTH 739
SM00355: domain 15 of 20, from 745 to 767: score 26.5, E = 0.0038
*->ykCpigCgksfssk.aLkrHmrvH<-*
++C++ Cgk+f++ + L +H+r+H
KIAA1141 745 LVCNE-CGKTFRQSsCLSKHQRIH 767
SM00355: domain 16 of 20, from 773 to 795: score 28.3, E = 0.001
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C++ Cgk f +L+rH+r+H
KIAA1141 773 YVCDY-CGKAFGLSaELVRHQRIH 795
SM00355: domain 17 of 20, from 801 to 823: score 26.0, E = 0.0053
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C++ Cgk f++ + L H rvH
KIAA1141 801 YVCQE-CGKAFTQSsCLSIHRRVH 823
SM00355: domain 18 of 20, from 829 to 851: score 30.7, E = 0.0002
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C + Cgk f +k +L++H+r+H
KIAA1141 829 YRCGE-CGKAFAQKaNLTQHQRIH 851
SM00355: domain 19 of 20, from 857 to 879: score 28.2, E = 0.0011
*->ykCpigCgksfssk.aLkrHmrvH<-*
y C++ Cgk f +L++H+rvH
KIAA1141 857 YSCNV-CGKAFVLSaHLNQHLRVH 879
SM00355: domain 20 of 20, from 885 to 907: score 21.3, E = 0.13
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C+ C+k f+ +++L rH+rvH
KIAA1141 885 YQCQR-CQKAFRCHsSLSRHQRVH 907
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