hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18314566/chunk_1/iprscan-20080501-18314566.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1141 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 562.8 3.2e-166 20 PF00096.16.fs Zinc finger, C2H2 type 523.4 2.2e-154 20 PF01096.9.fs Transcription factor S-II (TFIIS) 49.5 1.3e-14 14 PF01286.9.fs XPA protein N-terminal 49.7 2.1e-13 12 PF01352.17.fs KRAB box 44.9 5e-12 1 PF01352.17.ls KRAB box 46.9 6.2e-11 1 PF07754.2.fs Domain of unknown function (DUF1610) 34.8 2.6e-08 10 PF08792.1.fs A2L zinc ribbon domain 24.4 1.9e-05 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.ls 1/1 49 89 .. 1 41 [] 46.9 6.2e-11 PF01352.17.fs 1/1 49 89 .. 1 41 [] 44.9 5e-12 PF00096.16.fs 1/20 252 274 .. 1 24 [] 30.1 3.1e-06 PF00096.16.ls 1/20 252 274 .. 1 24 [] 32.0 1.9e-06 PF00096.16.fs 3/20 363 385 .. 1 24 [] 30.9 1.9e-06 PF00096.16.ls 3/20 363 385 .. 1 24 [] 32.8 1.1e-06 PF00096.16.ls 4/20 390 412 .. 1 24 [] 26.8 7.2e-05 PF00096.16.fs 4/20 390 412 .. 1 24 [] 24.8 6.2e-05 PF00096.16.fs 5/20 418 440 .. 1 24 [] 25.0 5.4e-05 PF00096.16.ls 5/20 418 440 .. 1 24 [] 27.0 6.1e-05 PF00096.16.ls 6/20 446 468 .. 1 24 [] 23.7 0.0006 PF00096.16.ls 7/20 474 496 .. 1 24 [] 28.2 2.8e-05 PF00096.16.fs 7/20 474 496 .. 1 24 [] 26.2 2.8e-05 PF00096.16.ls 8/20 502 524 .. 1 24 [] 30.5 5.6e-06 PF00096.16.fs 8/20 502 524 .. 1 24 [] 28.5 7.5e-06 PF00096.16.fs 9/20 530 552 .. 1 24 [] 25.1 5.3e-05 PF00096.16.ls 9/20 530 552 .. 1 24 [] 27.0 6e-05 PF00096.16.ls 11/20 605 627 .. 1 24 [] 21.5 0.0029 PF00096.16.fs 12/20 634 656 .. 1 24 [] 28.4 8.1e-06 PF00096.16.ls 12/20 634 656 .. 1 24 [] 30.3 6.2e-06 PF00096.16.ls 13/20 689 711 .. 1 24 [] 34.7 2.9e-07 PF00096.16.fs 13/20 689 711 .. 1 24 [] 32.8 6.5e-07 PF00096.16.ls 14/20 717 739 .. 1 24 [] 31.4 3e-06 PF00096.16.fs 14/20 717 739 .. 1 24 [] 29.4 4.4e-06 PF00096.16.ls 15/20 745 767 .. 1 24 [] 32.3 1.5e-06 PF00096.16.fs 15/20 745 767 .. 1 24 [] 30.4 2.6e-06 PF00096.16.ls 16/20 773 795 .. 1 24 [] 32.9 1e-06 PF00096.16.fs 16/20 773 795 .. 1 24 [] 30.9 1.9e-06 PF00096.16.ls 17/20 801 823 .. 1 24 [] 32.9 1e-06 PF00096.16.fs 17/20 801 823 .. 1 24 [] 31.0 1.8e-06 PF00096.16.ls 18/20 829 851 .. 1 24 [] 38.1 2.8e-08 PF00096.16.fs 18/20 829 851 .. 1 24 [] 36.1 9.4e-08 PF00096.16.fs 19/20 857 879 .. 1 24 [] 30.3 2.7e-06 PF00096.16.ls 19/20 857 879 .. 1 24 [] 32.2 1.7e-06 PF00096.16.ls 20/20 885 907 .. 1 24 [] 22.4 0.0015 Alignments of top-scoring domains: PF01352.17.ls: domain 1 of 1, from 49 to 89: score 46.9, E = 6.2e-11 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* Vt +DV +dFt We+L+ +Q + ++d l+N+++L+ l+ KIAA1141 49 VTLKDVGMDFTLGDWEQLGLEQGDTFWDTALDNCQDLFLLD 89 PF01352.17.fs: domain 1 of 1, from 49 to 89: score 44.9, E = 5e-12 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* Vt +DV +dFt We+L+ +Q + ++d l+N+++L+ l+ KIAA1141 49 VTLKDVGMDFTLGDWEQLGLEQGDTFWDTALDNCQDLFLLD 89 PF00096.16.fs: domain 1 of 20, from 252 to 274: score 30.1, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs ++ L++H+ tH KIAA1141 252 YQCS-ECGKSFSGSYRLTQHWITH 274 PF00096.16.ls: domain 1 of 20, from 252 to 274: score 32.0, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs ++ L++H+ tH KIAA1141 252 YQCS-ECGKSFSGSYRLTQHWITH 274 PF00096.16.fs: domain 3 of 20, from 363 to 385: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+r +L+rH+++H KIAA1141 363 YNCN-ECGKAFTRIFHLTRHQKIH 385 PF00096.16.ls: domain 3 of 20, from 363 to 385: score 32.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+r +L+rH+++H KIAA1141 363 YNCN-ECGKAFTRIFHLTRHQKIH 385 PF00096.16.ls: domain 4 of 20, from 390 to 412: score 26.8, E = 7.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+ +F+ +++L +H++tH KIAA1141 390 YECS-KCQATFNLRKHLIQHQKTH 412 PF00096.16.fs: domain 4 of 20, from 390 to 412: score 24.8, E = 6.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+ +F+ +++L +H++tH KIAA1141 390 YECS-KCQATFNLRKHLIQHQKTH 412 PF00096.16.fs: domain 5 of 20, from 418 to 440: score 25.0, E = 5.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +Cgk F+++s L H+ H KIAA1141 418 SECQ-ECGKIFRHSSLLIEHQALH 440 PF00096.16.ls: domain 5 of 20, from 418 to 440: score 27.0, E = 6.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +Cgk F+++s L H+ H KIAA1141 418 SECQ-ECGKIFRHSSLLIEHQALH 440 PF00096.16.ls: domain 6 of 20, from 446 to 468: score 23.7, E = 0.0006 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ + gksF+++s+Lk H+r+H KIAA1141 446 YKCN-ERGKSFRHNSTLKIHQRVH 468 PF00096.16.ls: domain 7 of 20, from 474 to 496: score 28.2, E = 2.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r+ +L+ H+r+H KIAA1141 474 YKCS-ECGKAFHRHTHLNEHRRIH 496 PF00096.16.fs: domain 7 of 20, from 474 to 496: score 26.2, E = 2.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r+ +L+ H+r+H KIAA1141 474 YKCS-ECGKAFHRHTHLNEHRRIH 496 PF00096.16.ls: domain 8 of 20, from 502 to 524: score 30.5, E = 5.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C +sFsr+s+L rH+ +H KIAA1141 502 HKCQ-ECVRSFSRPSHLMRHQAIH 524 PF00096.16.fs: domain 8 of 20, from 502 to 524: score 28.5, E = 7.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C +sFsr+s+L rH+ +H KIAA1141 502 HKCQ-ECVRSFSRPSHLMRHQAIH 524 PF00096.16.fs: domain 9 of 20, from 530 to 552: score 25.1, E = 5.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C+++Fs++ L +H+++H KIAA1141 530 YSCA-ECKETFSDNNRLVQHQKMH 552 PF00096.16.ls: domain 9 of 20, from 530 to 552: score 27.0, E = 6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C+++Fs++ L +H+++H KIAA1141 530 YSCA-ECKETFSDNNRLVQHQKMH 552 PF00096.16.ls: domain 11 of 20, from 605 to 627: score 21.5, E = 0.0029 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C k+Fs ++ L++H r+H KIAA1141 605 FKCN-KCEKTFSCSKYLTQHERIH 627 PF00096.16.fs: domain 12 of 20, from 634 to 656: score 28.4, E = 8.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F ++ L +H+r+H KIAA1141 634 FECD-QCGKAFGQSTRLIHHQRIH 656 PF00096.16.ls: domain 12 of 20, from 634 to 656: score 30.3, E = 6.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F ++ L +H+r+H KIAA1141 634 FECD-QCGKAFGQSTRLIHHQRIH 656 PF00096.16.ls: domain 13 of 20, from 689 to 711: score 34.7, E = 2.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs++++L +H+ +H KIAA1141 689 FKCN-ECGKTFSHSAHLSKHQLIH 711 PF00096.16.fs: domain 13 of 20, from 689 to 711: score 32.8, E = 6.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs++++L +H+ +H KIAA1141 689 FKCN-ECGKTFSHSAHLSKHQLIH 711 PF00096.16.ls: domain 14 of 20, from 717 to 739: score 31.4, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+++F+++ L +H rtH KIAA1141 717 FKCS-KCDRVFTQRNYLVQHERTH 739 PF00096.16.fs: domain 14 of 20, from 717 to 739: score 29.4, E = 4.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+++F+++ L +H rtH KIAA1141 717 FKCS-KCDRVFTQRNYLVQHERTH 739 PF00096.16.ls: domain 15 of 20, from 745 to 767: score 32.3, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +Cgk+F+++s L +H+r+H KIAA1141 745 LVCN-ECGKTFRQSSCLSKHQRIH 767 PF00096.16.fs: domain 15 of 20, from 745 to 767: score 30.4, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +Cgk+F+++s L +H+r+H KIAA1141 745 LVCN-ECGKTFRQSSCLSKHQRIH 767 PF00096.16.ls: domain 16 of 20, from 773 to 795: score 32.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +++L rH+r+H KIAA1141 773 YVCD-YCGKAFGLSAELVRHQRIH 795 PF00096.16.fs: domain 16 of 20, from 773 to 795: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +++L rH+r+H KIAA1141 773 YVCD-YCGKAFGLSAELVRHQRIH 795 PF00096.16.ls: domain 17 of 20, from 801 to 823: score 32.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s L H+r+H KIAA1141 801 YVCQ-ECGKAFTQSSCLSIHRRVH 823 PF00096.16.fs: domain 17 of 20, from 801 to 823: score 31.0, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s L H+r+H KIAA1141 801 YVCQ-ECGKAFTQSSCLSIHRRVH 823 PF00096.16.ls: domain 18 of 20, from 829 to 851: score 38.1, E = 2.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F +k+nL++H+r+H KIAA1141 829 YRCG-ECGKAFAQKANLTQHQRIH 851 PF00096.16.fs: domain 18 of 20, from 829 to 851: score 36.1, E = 9.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F +k+nL++H+r+H KIAA1141 829 YRCG-ECGKAFAQKANLTQHQRIH 851 PF00096.16.fs: domain 19 of 20, from 857 to 879: score 30.3, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +++L++Hlr+H KIAA1141 857 YSCN-VCGKAFVLSAHLNQHLRVH 879 PF00096.16.ls: domain 19 of 20, from 857 to 879: score 32.2, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +++L++Hlr+H KIAA1141 857 YSCN-VCGKAFVLSAHLNQHLRVH 879 PF00096.16.ls: domain 20 of 20, from 885 to 907: score 22.4, E = 0.0015 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C+k+F+ +s+L rH+r+H KIAA1141 885 YQCQ-RCQKAFRCHSSLSRHQRVH 907 //