hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18300749/chunk_1/iprscan-20080501-18300749.nocrc
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Query sequence: KIAA1140
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                  75.5    6.4e-18   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/7     308   341 ..     1    34 []     2.4  2.7e+02
SM00028    2/7     381   425 ..     1    34 []     0.4  4.5e+02
SM00028    3/7     460   493 ..     1    34 []    13.2       16
SM00028    4/7     605   638 ..     1    34 []     3.3  2.1e+02
SM00028    5/7     639   672 ..     1    34 []    24.5    0.015
SM00028    6/7     673   706 ..     1    34 []     3.8  1.9e+02
SM00028    7/7     707   740 ..     1    34 []    27.9   0.0014

Alignments of top-scoring domains:
SM00028: domain 1 of 7, from 308 to 341: score 2.4, E = 2.7e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                         +y+ +++  + g+ + A+  ++++++l P++   
    KIAA1140   308    FHLWYQVALSMVACGKSAYAVSLLRECVKLRPSD    341  

SM00028: domain 2 of 7, from 381 to 425: score 0.4, E = 4.5e+02
                   *->aealynlGnaylkl...........gdydeAieyyekALeldPnn<-
                      ++ ++ lG+ y ++ ++ + ++++++ + +A++ +e+A +l+P++  
    KIAA1140   381    PKGYLALGLTYSLQatdatlkskqdELHRKALQTLERAQQLAPSD   425  

                   *
                    
    KIAA1140     -   -    

SM00028: domain 3 of 7, from 460 to 493: score 13.2, E = 16
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a al  l++++ +++ ++ A++  + A++  P+n   
    KIAA1140   460    AHALHLLALLFSAQKHHQHALDVVNMAITEHPEN    493  

SM00028: domain 4 of 7, from 605 to 638: score 3.3, E = 2.1e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       +++++ +++++ +  ++eA  + ++A  l P+    
    KIAA1140   605    EQIWLQAAELFMEQQHLKEAGFCIQEAAGLFPTS    638  

SM00028: domain 5 of 7, from 639 to 672: score 24.5, E = 0.015
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        +ly +G + + +g+++eA + y++AL+++P+    
    KIAA1140   639    HSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDG    672  

SM00028: domain 6 of 7, from 673 to 706: score 3.8, E = 1.9e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +++   lG+++ +lg    A + ++ A+e + ++   
    KIAA1140   673    VRIMHSLGLMLSRLGHKSLAQKVLRDAVERQSTC    706  

SM00028: domain 7 of 7, from 707 to 740: score 27.9, E = 0.0014
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       ea+  lG+++ ++g+ + A++++  ALel+ +    
    KIAA1140   707    HEAWQGLGEVLQAQGQNEAAVDCFLTALELEASS    740  

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