hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18300749/chunk_1/iprscan-20080501-18300749.nocrc
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Query sequence: KIAA1140
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07719.7.ls Tetratricopeptide repeat                       107.2    4.3e-29   7
PF07719.7.fs Tetratricopeptide repeat                        98.1      2e-26   8
PF00515.18.ls Tetratricopeptide repeat                        74.7    2.7e-19   7
PF00515.18.fs Tetratricopeptide repeat                        67.1    4.3e-18   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00515.18.fs   3/7     460   493 ..     1    34 []    10.2    0.066
PF00515.18.ls   3/7     460   493 ..     1    34 []    12.2     0.17
PF00515.18.ls   5/7     639   672 ..     1    34 []    24.4  0.00036
PF07719.7.fs   6/8     639   672 ..     1    34 []    25.3  4.6e-06
PF00515.18.fs   5/7     639   672 ..     1    34 []    22.4  2.2e-05
PF07719.7.ls   5/7     639   672 ..     1    34 []    27.3  4.9e-05
PF00515.18.ls   7/7     707   740 ..     1    34 []    27.7  3.9e-05
PF07719.7.ls   7/7     707   740 ..     1    34 []    25.7  0.00015
PF00515.18.fs   7/7     707   740 ..     1    34 []    25.7  2.7e-06

Alignments of top-scoring domains:
PF00515.18.fs: domain 3 of 7, from 460 to 493: score 10.2, E = 0.066
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a a+  l++++ +++ ++ A++  + A+   P+n   
    KIAA1140   460    AHALHLLALLFSAQKHHQHALDVVNMAITEHPEN    493  

PF00515.18.ls: domain 3 of 7, from 460 to 493: score 12.2, E = 0.17
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a a+  l++++ +++ ++ A++  + A+   P+n   
    KIAA1140   460    AHALHLLALLFSAQKHHQHALDVVNMAITEHPEN    493  

PF00515.18.ls: domain 5 of 7, from 639 to 672: score 24.4, E = 0.00036
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        ++y +G + + +g+++eA + y++AL ++P+    
    KIAA1140   639    HSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDG    672  

PF07719.7.fs: domain 6 of 8, from 639 to 672: score 25.3, E = 4.6e-06
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        +ly++G++++ +g++eeA+++y++Al  +P+    
    KIAA1140   639    HSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDG    672  

PF00515.18.fs: domain 5 of 7, from 639 to 672: score 22.4, E = 2.2e-05
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        ++y +G + + +g+++eA + y++AL ++P+    
    KIAA1140   639    HSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDG    672  

PF07719.7.ls: domain 5 of 7, from 639 to 672: score 27.3, E = 4.9e-05
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        +ly++G++++ +g++eeA+++y++Al  +P+    
    KIAA1140   639    HSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDG    672  

PF00515.18.ls: domain 7 of 7, from 707 to 740: score 27.7, E = 3.9e-05
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       ea+  lG ++ ++g+ ++A++++  ALel+ +    
    KIAA1140   707    HEAWQGLGEVLQAQGQNEAAVDCFLTALELEASS    740  

PF07719.7.ls: domain 7 of 7, from 707 to 740: score 25.7, E = 0.00015
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       ea+  lG+++ ++g+ e A++++  Alel+ +    
    KIAA1140   707    HEAWQGLGEVLQAQGQNEAAVDCFLTALELEASS    740  

PF00515.18.fs: domain 7 of 7, from 707 to 740: score 25.7, E = 2.7e-06
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       ea+  lG ++ ++g+ ++A++++  ALel+ +    
    KIAA1140   707    HEAWQGLGEVLQAQGQNEAAVDCFLTALELEASS    740  

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