hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18282836/chunk_1/iprscan-20080501-18282836.nocrc
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Query sequence: KIAA1139
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 132.9    3.5e-35   5
SM00454                                                 113.2      3e-29   2
SM00326                                                  37.0    2.6e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/5       3    32 ..     1    30 []    25.8    0.006
SM00248    2/5      36    65 ..     1    30 []    30.4  0.00025
SM00248    3/5      69    98 ..     1    30 []    16.1      5.1
SM00248    4/5     110   139 ..     1    30 []    35.3  8.2e-06
SM00248    5/5     142   171 ..     1    30 []    25.3   0.0085
SM00326    1/1     206   268 ..     1    58 []    37.0  2.6e-06
SM00454    1/2     408   474 ..     1    67 []    54.5  1.4e-11
SM00454    2/2     477   544 ..     1    67 []    58.7  7.4e-13

Alignments of top-scoring domains:
SM00248: domain 1 of 5, from 3 to 32: score 25.8, E = 0.006
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+ pLH+Aa  g+le v+lLl+++a +na   
    KIAA1139     3    NGMRPLHYAAWQGRLEPVRLLLRASAAVNA    32   

SM00248: domain 2 of 5, from 36 to 65: score 30.4, E = 0.00025
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG+ pLHlAa++g++ev ++Ll++  ++ +   
    KIAA1139    36    DGQIPLHLAAQYGHYEVSEMLLQHQSNPCL    65   

SM00248: domain 3 of 5, from 69 to 98: score 16.1, E = 5.1
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        +TpL lA+e g+l+v++lLl++   + +   
    KIAA1139    69    AKKTPLDLACEFGRLKVAQLLLNSHLCVAL    98   

SM00248: domain 4 of 5, from 110 to 139: score 35.3, E = 8.2e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +  TpLHlAa+ng+ ev++ Ll++g +in    
    KIAA1139   110    NYTTPLHLAAKNGHREVIRQLLRAGIEINR    139  

SM00248: domain 5 of 5, from 142 to 171: score 25.3, E = 0.0085
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                         T+LH Aa +g  evv+lLl+ g+d+n+   
    KIAA1139   142    KTGTALHEAALYGKTEVVRLLLEGGVDVNI    171  

SM00326: domain 1 of 1, from 206 to 268: score 37.0, E = 2.6e-06
                   *->eyvvAlYDyea.qnedELsFkkGDiitvleksddgWweGelnr....
                       +v+Al D+    ++  L +++GD+itvle++ dg w+G ++ ++++
    KIAA1139   206    LKVRALKDFWNlHDPTALNVRAGDVITVLEQHPDGRWKGHIHEsqrg 252  

                   tGkeGlfPsnYVeeie<-*
                   t ++G+fP   Ve++    
    KIAA1139   253 TDRIGYFPPGIVEVVS    268  

SM00454: domain 1 of 2, from 408 to 474: score 54.5, E = 1.4e-11
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       ++ +   + +WL   +le Y+ +F+++g+d     ++t  edL+ +
    KIAA1139   408    LEgKDAQAIHNWLSEFQLEGYTAHFLQAGYDVPTISRMT-PEDLTAI 453  

                   GitllGhRkkIlsaiqklkeq<-*
                   G+t++GhRkkI+s+i +l      
    KIAA1139   454 GVTKPGHRKKIASEIAQLSIA    474  

SM00454: domain 2 of 2, from 477 to 544: score 58.7, E = 7.4e-13
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       ++  p ++ eWL ++gl+qY +++ + g+d++ l++ ++ e L+e+
    KIAA1139   477    LPsYIPTDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEI 523  

                   GitllGhRkkIlsaiqklkeq<-*
                   G+++lGh+kk++ +++ l e    
    KIAA1139   524 GVNKLGHQKKLMLGVKRLAEL    544  

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