hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18282836/chunk_1/iprscan-20080501-18282836.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1139 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00536.20.fs SAM domain (Sterile alpha motif) 160.8 1e-46 2 PF00536.20.ls SAM domain (Sterile alpha motif) 164.7 2.1e-46 2 PF00023.20.fs Ankyrin repeat 142.3 1.2e-39 5 PF00023.20.ls Ankyrin repeat 141.1 2.8e-39 5 PF07647.7.fs SAM domain (Sterile alpha motif) 96.2 1.5e-27 2 PF07647.7.ls SAM domain (Sterile alpha motif) 100.1 6.1e-27 2 PF07653.7.fs Variant SH3 domain 23.1 5.4e-06 1 PF07653.7.ls Variant SH3 domain 24.9 0.00027 1 PF00018.18.ls SH3 domain 14.8 0.00053 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/5 3 35 .. 1 33 [] 26.5 2.1e-06 PF00023.20.ls 1/5 3 35 .. 1 33 [] 28.5 2.2e-05 PF00023.20.ls 2/5 36 68 .. 1 33 [] 38.4 2.3e-08 PF00023.20.fs 2/5 36 68 .. 1 33 [] 36.4 3.6e-09 PF00023.20.ls 3/5 69 101 .. 1 33 [] 8.5 1.7 PF00023.20.fs 3/5 69 91 .. 1 23 [. 9.2 0.14 PF00023.20.ls 4/5 110 142 .. 1 33 [] 39.6 1e-08 PF00023.20.fs 4/5 110 142 .. 1 33 [] 37.6 1.7e-09 PF00023.20.ls 5/5 145 174 .. 1 33 [] 26.1 0.00011 PF00023.20.fs 5/5 145 174 .. 4 33 .] 32.6 4.2e-08 PF00018.18.ls 1/1 206 267 .. 1 59 [] 14.8 0.00053 PF07653.7.fs 1/1 207 267 .. 1 69 [] 23.1 5.4e-06 PF07653.7.ls 1/1 207 267 .. 1 69 [] 24.9 0.00027 PF07647.7.ls 1/2 408 474 .. 1 72 [] 52.0 1.9e-12 PF07647.7.fs 1/2 408 474 .. 1 72 [] 50.0 5.2e-14 PF00536.20.fs 1/2 409 472 .. 1 65 [] 81.9 1.7e-23 PF00536.20.ls 1/2 409 472 .. 1 65 [] 83.9 4.6e-22 PF00536.20.ls 2/2 478 542 .. 1 65 [] 80.8 3.8e-21 PF07647.7.ls 2/2 478 544 .. 1 72 [] 48.1 2.7e-11 PF07647.7.fs 2/2 478 544 .. 1 72 [] 46.2 6.9e-13 PF00536.20.fs 2/2 478 542 .. 1 65 [] 78.8 1.4e-22 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 5, from 3 to 35: score 26.5, E = 2.1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ PLH+Aa g+le v+lLl + A +na KIAA1139 3 NGMRPLHYAAWQGRLEPVRLLLRASAAVNAASL 35 PF00023.20.ls: domain 1 of 5, from 3 to 35: score 28.5, E = 2.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ PLH+Aa g+le v+lLl + A +na KIAA1139 3 NGMRPLHYAAWQGRLEPVRLLLRASAAVNAASL 35 PF00023.20.ls: domain 2 of 5, from 36 to 68: score 38.4, E = 2.3e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ PLHlAa++g++ev ++Ll++ +++++++ KIAA1139 36 DGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNK 68 PF00023.20.fs: domain 2 of 5, from 36 to 68: score 36.4, E = 3.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ PLHlAa++g++ev ++Ll++ +++++++ KIAA1139 36 DGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNK 68 PF00023.20.ls: domain 3 of 5, from 69 to 101: score 8.5, E = 1.7 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL lA++ g+l+v++lLl+ ++ + KIAA1139 69 AKKTPLDLACEFGRLKVAQLLLNSHLCVALLEG 101 PF00023.20.fs: domain 3 of 5, from 69 to 91: score 9.2, E = 0.14 *->dGfTPLHlAalrgnlevvklLls<-* TPL lA++ g+l+v++lLl+ KIAA1139 69 AKKTPLDLACEFGRLKVAQLLLN 91 PF00023.20.ls: domain 4 of 5, from 110 to 142: score 39.6, E = 1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + TPLHlAa++g+ ev++ Ll +G ++n q++ KIAA1139 110 NYTTPLHLAAKNGHREVIRQLLRAGIEINRQTK 142 PF00023.20.fs: domain 4 of 5, from 110 to 142: score 37.6, E = 1.7e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + TPLHlAa++g+ ev++ Ll +G ++n q++ KIAA1139 110 NYTTPLHLAAKNGHREVIRQLLRAGIEINRQTK 142 PF00023.20.ls: domain 5 of 5, from 145 to 174: score 26.1, E = 0.00011 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* T+LH Aal+g +evv+lLl+ G d+n+++ KIAA1139 145 ---TALHEAALYGKTEVVRLLLEGGVDVNIRNT 174 PF00023.20.fs: domain 5 of 5, from 145 to 174: score 32.6, E = 4.2e-08 *->TPLHlAalrgnlevvklLlsqGAdlnaqdd<-* T+LH Aal+g +evv+lLl+ G d+n+++ KIAA1139 145 TALHEAALYGKTEVVRLLLEGGVDVNIRNT 174 PF00018.18.ls: domain 1 of 1, from 206 to 267: score 14.8, E = 0.00053 *->kkvvALYDYeare.sdELsFkkGDvitvleksddpgWWkgrlkgtgG kv+AL D+ +++ L + GDvitvle+++d g Wkg + + KIAA1139 206 LKVRALKDFWNLHdPTALNVRAGDVITVLEQHPD-GRWKGHIHESQR 251 ...keGliPsNYVepv<-* ++++ G++P Ve v KIAA1139 252 gtdRIGYFPPGIVEVV 267 PF07653.7.fs: domain 1 of 1, from 207 to 267: score 23.1, E = 5.4e-06 *->ygraiedyvaAt.dknenleeeeLslkkGdvvkVidv.ggskdddgw ++ra++d+ + +d+++ L++++Gdv+ V+ ++ ++ ++ g+ KIAA1139 207 KVRALKDFWN-LhDPTA------LNVRAGDVITVL-EqHPDGRWKGH 245 .wegeslggGrrrRGlvPssaveel<-* e + g r G++P+ +ve++ KIAA1139 246 iHESQR-GTDRI--GYFPPGIVEVV 267 PF07653.7.ls: domain 1 of 1, from 207 to 267: score 24.9, E = 0.00027 *->ygraiedyvaAt.dknenleeeeLslkkGdvvkVidv.ggskdddgw ++ra++d+ + +d+++ L++++Gdv+ V+ ++ ++ ++ g+ KIAA1139 207 KVRALKDFWN-LhDPTA------LNVRAGDVITVL-EqHPDGRWKGH 245 .wegeslggGrrrRGlvPssaveel<-* e + g r G++P+ +ve++ KIAA1139 246 iHESQR-GTDRI--GYFPPGIVEVV 267 PF07647.7.ls: domain 1 of 2, from 408 to 474: score 52.0, E = 1.9e-12 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa e ++++ +++WL++ l + Y+ F+++g++ + r+t edL KIAA1139 408 LEGKDAQAIHNWLSEFQL-EGYTAHFLQAGYDV-PTI-SRMTPEDL- 450 klalGitsvghRkkilkkiqelkqq<-* + a+G+t++ghRkki ++i +l KIAA1139 451 T-AIGVTKPGHRKKIASEIAQLSIA 474 PF07647.7.fs: domain 1 of 2, from 408 to 474: score 50.0, E = 5.2e-14 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa e ++++ +++WL++ l + Y+ F+++g++ + r+t edL KIAA1139 408 LEGKDAQAIHNWLSEFQL-EGYTAHFLQAGYDV-PTI-SRMTPEDL- 450 klalGitsvghRkkilkkiqelkqq<-* + a+G+t++ghRkki ++i +l KIAA1139 451 T-AIGVTKPGHRKKIASEIAQLSIA 474 PF00536.20.fs: domain 1 of 2, from 409 to 472: score 81.9, E = 1.7e-23 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG +g++ + + +WL ++ l+ Y+ +Fl+agy d+ t++++t+eDL+++G KIAA1139 409 EGKDAQAIHNWLSEFQLEGYTAHFLQAGY-DVPTISRMTPEDLTAIG 454 vtllGHrkKIlssIqgLk<-* vt++GHrkKI+s I +L KIAA1139 455 VTKPGHRKKIASEIAQLS 472 PF00536.20.ls: domain 1 of 2, from 409 to 472: score 83.9, E = 4.6e-22 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG +g++ + + +WL ++ l+ Y+ +Fl+agy d+ t++++t+eDL+++G KIAA1139 409 EGKDAQAIHNWLSEFQLEGYTAHFLQAGY-DVPTISRMTPEDLTAIG 454 vtllGHrkKIlssIqgLk<-* vt++GHrkKI+s I +L KIAA1139 455 VTKPGHRKKIASEIAQLS 472 PF00536.20.ls: domain 2 of 2, from 478 to 542: score 80.8, E = 3.8e-21 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + + ++ eWL ++gl+qY ++ +s+gy+++ ++ lt+e+L+++G KIAA1139 478 PSYIPTDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIG 524 vtllGHrkKIlssIqgLk<-* v++lGH+kK+++ +++L KIAA1139 525 VNKLGHQKKLMLGVKRLA 542 PF07647.7.ls: domain 2 of 2, from 478 to 544: score 48.1, E = 2.7e-11 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ + ++ eWL ++gl +qY + + g++++ l+ + lt e+L KIAA1139 478 PSYIPT-DLLEWLCALGL-PQYHKQLVSSGYDSMGLV-ADLTWEEL- 520 klalGitsvghRkkilkkiqelkqq<-* + ++G++++gh+kk++ ++++l + KIAA1139 521 Q-EIGVNKLGHQKKLMLGVKRLAEL 544 PF07647.7.fs: domain 2 of 2, from 478 to 544: score 46.2, E = 6.9e-13 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ + ++ eWL ++gl +qY + + g++++ l+ + lt e+L KIAA1139 478 PSYIPT-DLLEWLCALGL-PQYHKQLVSSGYDSMGLV-ADLTWEEL- 520 klalGitsvghRkkilkkiqelkqq<-* + ++G++++gh+kk++ ++++l + KIAA1139 521 Q-EIGVNKLGHQKKLMLGVKRLAEL 544 PF00536.20.fs: domain 2 of 2, from 478 to 542: score 78.8, E = 1.4e-22 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + + ++ eWL ++gl+qY ++ +s+gy+++ ++ lt+e+L+++G KIAA1139 478 PSYIPTDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIG 524 vtllGHrkKIlssIqgLk<-* v++lGH+kK+++ +++L KIAA1139 525 VNKLGHQKKLMLGVKRLA 542 //