hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18265103/chunk_1/iprscan-20080501-18265103.nocrc
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Query sequence: KIAA1138
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
SM00479                                                 136.8    2.4e-36   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
SM00479       1/1    1077  1236 ..     1   196 []   136.8  2.4e-36

Alignments of top-scoring domains:
SM00479: domain 1 of 1, from 1077 to 1236: score 136.8, E = 2.4e-36
                   *->tlvviDcEtTGpdnegeldpgdeiiEiaaVdvdg.evfdtlVkPddr
                       ++++DcE+ +      +  g e++++++Vd+d ++v+dt+VkP d+
    KIAA1138  1077    GIYALDCEMSY------TTYGLELTRVTVVDTDVhVVYDTFVKP-DN 1116 

                   pipdyateihGSIteemlddgrsaaptfeeVleelleflkgsippgkegv
                   +i+dy+t+++G +te++l+d   +  t+++V+  ll+ + +++       
    KIAA1138  1117 EIVDYNTRFSG-VTEADLAD---TSVTLRDVQAVLLSMFSADT------- 1155 

                   clvagNsanfDlrfLklehprlglkeppknpflviDTadlaktlklarkl
                    +++g+s++ Dl +Lk  h+             v DT        l++++
    KIAA1138  1156 -ILIGHSLESDLLALKVIHST------------VVDT------SVLFPHR 1186 

                   fpglpkagrrkysLkkLaerlgleviq.....HrAldDArataklfkkll
                   ++      ++k+sL++L + ++ ++iq++ ++H++ +DA a++ l+++++
    KIAA1138  1187 LG-----LPYKRSLRNLMADYLRQIIQdnvdgHSSSEDAGACMHLVIWKV 1231 

                   erlae<-*
                   ++ a+   
    KIAA1138  1232 REDAK    1236 

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