hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18265103/chunk_1/iprscan-20080501-18265103.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1138 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00929.14.fs Exonuclease 105.4 1.1e-31 1 PF00929.14.ls Exonuclease 107.2 4.6e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00929.14.fs 1/1 1078 1227 .. 1 187 [] 105.4 1.1e-31 PF00929.14.ls 1/1 1078 1227 .. 1 187 [] 107.2 4.6e-29 Alignments of top-scoring domains: PF00929.14.fs: domain 1 of 1, from 1078 to 1227: score 105.4, E = 1.1e-31 *->lvviDcEtTGldpkgavsgkstekdeiiEiaavsivngenigevfdt ++++DcE+ ++ ++E+ +v++v+ + +++v+dt KIAA1138 1078 IYALDCEMSYTTY-------------GLELTRVTVVDTD-VHVVYDT 1110 yvkPerppkitdeatkftGItqemldnapsfee.vleefleflkklsilv +vkP++ i+d++t+f+G+t+++l + + +v +l+++ ++il+ KIAA1138 1111 FVKPDNE--IVDYNTRFSGVTEADLADTSVTLRdVQAVLLSMFSADTILI 1158 ahnnkkasfdvgfllyddlrflklphpfsnikindvidtlilakkafkgf +h+ l+ dl++lk +h+ +v++++++ ++++ ++ KIAA1138 1159 GHS-----------LESDLLALKVIHS------TVVDTSVLFPHRLGLPY 1191 krgraktsLdaLaeklglefiqren.iaHrAldDArataelf<-* kr sL++L++ ++ ++iq n ++H++ +DA a++ l+ KIAA1138 1192 KR-----SLRNLMADYLRQIIQD-NvDGHSSSEDAGACMHLV 1227 PF00929.14.ls: domain 1 of 1, from 1078 to 1227: score 107.2, E = 4.6e-29 *->lvviDcEtTGldpkgavsgkstekdeiiEiaavsivngenigevfdt ++++DcE+ ++ ++E+ +v++v+ + +++v+dt KIAA1138 1078 IYALDCEMSYTTY-------------GLELTRVTVVDTD-VHVVYDT 1110 yvkPerppkitdeatkftGItqemldnapsfee.vleefleflkklsilv +vkP++ i+d++t+f+G+t+++l + + +v +l+++ ++il+ KIAA1138 1111 FVKPDNE--IVDYNTRFSGVTEADLADTSVTLRdVQAVLLSMFSADTILI 1158 ahnnkkasfdvgfllyddlrflklphpfsnikindvidtlilakkafkgf +h+ l+ dl++lk +h+ +v++++++ ++++ ++ KIAA1138 1159 GHS-----------LESDLLALKVIHS------TVVDTSVLFPHRLGLPY 1191 krgraktsLdaLaeklglefiqren.iaHrAldDArataelf<-* kr sL++L++ ++ ++iq n ++H++ +DA a++ l+ KIAA1138 1192 KR-----SLRNLMADYLRQIIQD-NvDGHSSSEDAGACMHLV 1227 //