hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18201996/chunk_1/iprscan-20080501-18201996.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1134 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06419.2.fs Conserved oligomeric complex COG6 1053.5 0 1 PF06419.2.ls Conserved oligomeric complex COG6 1004.7 3e-299 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06419.2.fs 1/1 51 605 .. 1 680 [. 1053.5 0 PF06419.2.ls 1/1 51 609 .. 1 727 [] 1004.7 3e-299 Alignments of top-scoring domains: PF06419.2.fs: domain 1 of 1, from 51 to 605: score 1053.5, E = 0 *->daLkaLSefyvensleaRRnLRsdiErrlLkiNeefLkefkeiksel +aLkaLS+f+vensl++RRnLR+diEr +L+iNeef+++fke+k+el KIAA1134 51 EALKALSTFFVENSLRTRRNLRGDIERKSLAINEEFVSIFKEVKEEL 97 drveEdvekmastceklkseletskattqdLiqktetlkeEkerlelrkk ++++Edv++m+++c++++s+l+++k++tqdLi+kt++l+ E + le+r++ KIAA1134 98 ESISEDVQAMSNCCQDMTSRLQAAKEQTQDLIVKTTKLQSESQKLEIRAQ 147 iinaFlanFqLsseElklLdgatrsgpvdedFFkvLdrVqeIhdncklLl +++aFl +FqL+s+E++lL+g tr+gp++edFFk+L+rV++Ih+++k+Ll KIAA1134 148 VADAFLSKFQLTSDEMSLLRG-TREGPITEDFFKALGRVKQIHNDVKVLL 196 qtqsqtAglSSFEEimekMaliqEgAyerLfRtiiCFqkGsPFLnsFRAn +t++qtAgl Eime+Mal+qE+AyerL+R KIAA1134 197 RTNQQTAGL----EIMEQMALLQETAYERLYR------------------ 224 EktqYwliDFLYSlesqsElrnltttdsqEvseiLrkAfkiLssrpvLFk w+ qsE+r lt+ +s++vs++L +A+++L++rpvL+k KIAA1134 225 -----WA---------QSECRTLTQ-ESCDVSPVLTQAMEALQDRPVLYK 259 ylidevgtaRsqsLlrqFieafdLTrggPgGtprPIELhAHDPlRYiGDm y++de+gtaR+++++r+Fi+a LTrggPgGtprPIE+h+HDPlRY+GDm KIAA1134 260 YTLDEFGTARRSTVVRGFIDA--LTRGGPGGTPRPIEMHSHDPLRYVGDM 307 LAWlHqaianEKElveaLFdiqdedlkdtPiskldqkkvalkgiedqlqs LAWlHqa+a+EKE++eaL+ k+v+ +g+e+++q+ KIAA1134 308 LAWLHQATASEKEHLEALL-----------------KHVTTQGVEENIQE 340 vLdeIleGvCrPlKvRvEQillaeknaIilfkisnlLkFYretfskivgq v+++I+eGvCrPlKvR+EQ++ ae++a++l+kisnlLkFY++t+s+ivg+ KIAA1134 341 VVGHITEGVCRPLKVRIEQVIVAEPGAVLLYKISNLLKFYHHTISGIVGN 390 ddssllntlkeLediskqifigvLedhvKetlmrkpkspsdLaLePPqRD ++++ll+t++e++++sk+if+ +L++h+ +lm+k+++p++ D KIAA1134 391 SATALLTTIEEMHLLSKKIFFNSLSLHA-SKLMDKVELPPP--------D 431 LlPPpaVselLsllkeIleiyesvltaedgeqldfkkllscvLDpllqmc L+P++a+ ++L ll+e l++++s+++++d++q+df+++lscvLDpllqmc KIAA1134 432 LGPSSALNQTLMLLREVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMC 481 qksAerkklkkSfpLakknekekaSlqLtsvDALLsssPsPPllpeidmi ++sA+ +l+++dm+ KIAA1134 482 TVSAS-------------------------------------NLGTADMA 494 vfliNcLqviqsllarydfldkrvemlqakieayldtLvtlqvselleka +f++N+L++++++la+++f+d+r+emlq++iea+ldtL+++q+s++l+++ KIAA1134 495 TFMVNSLYMMKTTLALFEFTDRRLEMLQFQIEAHLDTLINEQASYVLTRV 544 GLDLYSdlyqkiqqhRPDqGsLavtsakdalllkllsaksDtslealdml GL S++y++ qqh+P+qGsLa+++++d + lk+++ ++D++l+a+d l KIAA1134 545 GL---SYIYNTVQQHKPEQGSLANMPNLDSVTLKAAMVQFDRYLSAPDNL 591 lkNVHDKLnYylnqassdetlpqlqqllSpevr<-* l +pql+ llS++v+ KIAA1134 592 L-------------------IPQLNFLLSATVK 605 PF06419.2.ls: domain 1 of 1, from 51 to 609: score 1004.7, E = 3e-299 *->daLkaLSefyvensleaRRnLRsdiErrlLkiNeefLkefkeiksel +aLkaLS+f+vensl++RRnLR+diEr +L+iNeef+++fke+k+el KIAA1134 51 EALKALSTFFVENSLRTRRNLRGDIERKSLAINEEFVSIFKEVKEEL 97 drveEdvekmastceklkseletskattqdLiqktetlkeEkerlelrkk ++++Edv++m+++c++++s+l+++k++tqdLi+kt++l+ E + le+r++ KIAA1134 98 ESISEDVQAMSNCCQDMTSRLQAAKEQTQDLIVKTTKLQSESQKLEIRAQ 147 iinaFlanFqLsseElklLdgatrsgpvdedFFkvLdrVqeIhdncklLl +++aFl +FqL+s+E++lL+g tr+gp++edFFk+L+rV++Ih+++k+Ll KIAA1134 148 VADAFLSKFQLTSDEMSLLRG-TREGPITEDFFKALGRVKQIHNDVKVLL 196 qtqsqtAglSSFEEimekMaliqEgAyerLfRtiiCFqkGsPFLnsFRAn +t++qtAgl Eime+Mal+qE+AyerL+R KIAA1134 197 RTNQQTAGL----EIMEQMALLQETAYERLYR------------------ 224 EktqYwliDFLYSlesqsElrnltttdsqEvseiLrkAfkiLssrpvLFk w+ qsE+r lt+ +s++vs++L +A+++L++rpvL+k KIAA1134 225 -----WA---------QSECRTLTQ-ESCDVSPVLTQAMEALQDRPVLYK 259 ylidevgtaRsqsLlrqFieafdLTrggPgGtprPIELhAHDPlRYiGDm y++de+gtaR+++++r+Fi+a LTrggPgGtprPIE+h+HDPlRY+GDm KIAA1134 260 YTLDEFGTARRSTVVRGFIDA--LTRGGPGGTPRPIEMHSHDPLRYVGDM 307 LAWlHqaianEKElveaLFdiqdedlkdtPiskldqkkvalkgiedqlqs LAWlHqa+a+EKE++eaL+ k+v+ +g+e+++q+ KIAA1134 308 LAWLHQATASEKEHLEALL-----------------KHVTTQGVEENIQE 340 vLdeIleGvCrPlKvRvEQillaeknaIilfkisnlLkFYretfskivgq v+++I+eGvCrPlKvR+EQ++ ae++a++l+kisnlLkFY++t+s+ivg+ KIAA1134 341 VVGHITEGVCRPLKVRIEQVIVAEPGAVLLYKISNLLKFYHHTISGIVGN 390 ddssllntlkeLediskqifigvLedhvKetlmrkpkspsdLaLePPqRD ++++ll+t++e++++sk+if+ +L++h+ +lm+k+++p++ D KIAA1134 391 SATALLTTIEEMHLLSKKIFFNSLSLHA-SKLMDKVELPPP--------D 431 LlPPpaVselLsllkeIleiyesvltaedgeqldfkkllscvLDpllqmc L+P++a+ ++L ll+e l++++s+++++d++q+df+++lscvLDpllqmc KIAA1134 432 LGPSSALNQTLMLLREVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMC 481 qksAerkklkkSfpLakknekekaSlqLtsvDALLsssPsPPllpeidmi ++sA+ +l+++dm+ KIAA1134 482 TVSAS-------------------------------------NLGTADMA 494 vfliNcLqviqsllarydfldkrvemlqakieayldtLvtlqvselleka +f++N+L++++++la+++f+d+r+emlq++iea+ldtL+++q+s++l+++ KIAA1134 495 TFMVNSLYMMKTTLALFEFTDRRLEMLQFQIEAHLDTLINEQASYVLTRV 544 GLDLYSdlyqkiqqhRPDqGsLavtsakdalllkllsaksDtslealdml GL S++y++ qqh+P+qGsLa+++++d + lk+++ ++D++l+a+d l KIAA1134 545 GL---SYIYNTVQQHKPEQGSLANMPNLDSVTLKAAMVQFDRYLSAPDNL 591 lkNVHDKLnYylnqassdetlpqlqqllSpevreeickrsakklvkaYei l +pql+ llS++v+ KIAA1134 592 L-------------------IPQLNFLLSATVK----------------- 605 iykaledpnNGYedPesLlrrppeqVeeiL<-* rpp KIAA1134 606 --------------------RPPN------ 609 //