hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18145803/chunk_1/iprscan-20080501-18145803.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1131 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 428.4 9.1e-126 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 426.4 3.5e-125 1 PF07738.3.ls Sad1 / UNC-like C-terminal 141.0 2.9e-39 1 PF07738.3.fs Sad1 / UNC-like C-terminal 139.1 1.1e-38 1 PF06701.4.fs Mib_herc2 122.4 1.7e-35 1 PF06701.4.ls Mib_herc2 124.3 3.3e-34 1 PF00023.20.fs Ankyrin repeat 21.1 6.6e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/2 1 16 [. 18 33 .] 8.2 0.26 PF00023.20.fs 2/2 17 52 .. 1 33 [] 12.9 0.013 PF07738.3.fs 1/1 665 798 .. 1 147 [] 139.1 1.1e-38 PF07738.3.ls 1/1 665 798 .. 1 147 [] 141.0 2.9e-39 PF06701.4.ls 1/1 835 896 .. 1 69 [] 124.3 3.3e-34 PF06701.4.fs 1/1 835 896 .. 1 69 [] 122.4 1.7e-35 PF00632.15.fs 1/1 1737 2168 .] 1 351 [] 426.4 3.5e-125 PF00632.15.ls 1/1 1737 2168 .] 1 351 [] 428.4 9.1e-126 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 2, from 1 to 16: score 8.2, E = 0.26 *->vklLlsqGAdlnaqdd<-* +k Ll +GA+++++d KIAA1131 1 AKTLLRHGANPDLRDE 16 PF00023.20.fs: domain 2 of 2, from 17 to 52: score 12.9, E = 0.013 *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-* dG TPL A +rg+ evv L s+++ + +n dd KIAA1131 17 DGKTPLDKARERGHSEVVAILQSpgdWMCPVNKGDD 52 PF07738.3.fs: domain 1 of 1, from 665 to 798: score 139.1, E = 1.1e-38 *->lnyeaksprvilqedkDkympgpCwsfkgsrGfvvieLsepIiveav +n+++ + + il++d ++ +C+s+++++++++i+L ++i++a+ KIAA1131 665 RNLPYGRLEDILSRD---NSALNCHSNDDKNAWFAIDLGLWVIPSAY 708 tLeHveksvspdGnf.sSAPKdFeVsgserypdeesTeewvlLGeFtYdl tL+H + +++SA++++++++s++++ ++T+++++++++++++ KIAA1131 709 TLRHARG-------YgRSALRNWVFQVSKDGQ--NWTSLYTHVDDCSLNE 749 dgknlQtFqlqnpCpyiekqswvkyVklrilSNy....GnehYTClYrfR +g+++ t++l++p + +ekq +++V ri++++++ +G++hY l++f+ KIAA1131 750 PGSTA-TWPLDPP-K-DEKQ-GWRHV--RIKQMGknasGQTHYLSLSGFE 793 VhGts<-* ++Gt+ KIAA1131 794 LYGTV 798 PF07738.3.ls: domain 1 of 1, from 665 to 798: score 141.0, E = 2.9e-39 *->lnyeaksprvilqedkDkympgpCwsfkgsrGfvvieLsepIiveav +n+++ + + il++d ++ +C+s+++++++++i+L ++i++a+ KIAA1131 665 RNLPYGRLEDILSRD---NSALNCHSNDDKNAWFAIDLGLWVIPSAY 708 tLeHveksvspdGnf.sSAPKdFeVsgserypdeesTeewvlLGeFtYdl tL+H + +++SA++++++++s++++ ++T+++++++++++++ KIAA1131 709 TLRHARG-------YgRSALRNWVFQVSKDGQ--NWTSLYTHVDDCSLNE 749 dgknlQtFqlqnpCpyiekqswvkyVklrilSNy....GnehYTClYrfR +g+++ t++l++p + +ekq +++V ri++++++ +G++hY l++f+ KIAA1131 750 PGSTA-TWPLDPP-K-DEKQ-GWRHV--RIKQMGknasGQTHYLSLSGFE 793 VhGts<-* ++Gt+ KIAA1131 794 LYGTV 798 PF06701.4.ls: domain 1 of 1, from 835 to 896: score 124.3, E = 3.3e-34 *->GaRVVRGvDWkWgdQDGGeGgvGtVieigrwgstespdgwvvVqWDt GaRV RG DWkW+dQDG + g+GtV++ e ++gw++V+WD+ KIAA1131 835 GARVTRGLDWKWRDQDGSPQGEGTVTG-------ELHNGWIDVTWDA 874 GsrNsYRmGyeGkyDLklvdsa<-* G++NsYRmG+eGk+DLkl++ + KIAA1131 875 GGSNSYRMGAEGKFDLKLAPGY 896 PF06701.4.fs: domain 1 of 1, from 835 to 896: score 122.4, E = 1.7e-35 *->GaRVVRGvDWkWgdQDGGeGgvGtVieigrwgstespdgwvvVqWDt GaRV RG DWkW+dQDG + g+GtV++ e ++gw++V+WD+ KIAA1131 835 GARVTRGLDWKWRDQDGSPQGEGTVTG-------ELHNGWIDVTWDA 874 GsrNsYRmGyeGkyDLklvdsa<-* G++NsYRmG+eGk+DLkl++ + KIAA1131 875 GGSNSYRMGAEGKFDLKLAPGY 896 PF00632.15.fs: domain 1 of 1, from 1737 to 2168: score 426.4, E = 3.5e-125 *->tLlsrelfnPdygLFeysdd.t.dvn.e........s.g.yaedsyt L++ e +++d+g + ++d+ ++d ++ + +++ +++g y+++s++ KIAA1131 1737 ALVAAEFQRTDLGAWLCDDNfPdDESrHvdlggglkPpGyYVQRSCG 1783 lqinPlssesnpeh..lkyFkFiGrilGlAlyngrlldvpFpraFYKkLL l+ +P + +s+++++ k+F+F+G++l+++++++rl+d+p + +F+K+++ KIAA1131 1784 LFTAPFPQDSDELEriTKLFHFLGIFLAKCIQDNRLVDLPISKPFFKLMC 1833 m.k.gkp........................................... m++ ++ ++ +++++++ + ++++++ ++++++++ + ++ ++++++ KIAA1131 1834 MgDiKSNmskliyesrgdrdlhctesqseasteeghdslsvgsfeedsks 1883 ..................vtleDlesvDPelynSLkwllendgdrh.I.. + ++++++++ ++ +t+eD+e v+P+ +++Lk+++++ + r++I + KIAA1131 1884 efildppkpkppawfngiLTWEDFELVNPHRARFLKEIKDLAIKRRqIls 1933 ...............L.L.g...s.ledveedLeLtFsveeessagfdpd +++ ++++++++ ++L L+++++s+++ ++edL+L+F+ +++s + KIAA1131 1934 nkglsedekntklqeLvLkNpsgSgPPLSIEDLGLNFQFCPSSRI----- 1978 asdfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAF +++ v+ LkP G++ + T +N +eYV+L+ ++ + +gi+kQ+eAF KIAA1131 1979 ----YGFTAVD-LKPSGEDEMITMDNAEEYVDLMFDFCMHTGIQKQMEAF 2023 rkGFnevipsrlLslFdpeELelLicGsp..epiDvddLksnTeYkggYt r+GFn+v+p + Ls F+ eE+++++cG++++ + +d++++Te+k gYt KIAA1131 2024 RDGFNKVFPMEKLSSFSHEEVQMILCGNQspS-WAAEDIINYTEPKLGYT 2072 edsplktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsn +dsp + F +v+ +++++erk++LqF+TG+s +P+gG+++L+ KIAA1131 2073 RDSP--GFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLH----- 2115 GppkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIne p++t++++ v+ +d ++P+++TC+++L+LP+YsS Ei+re+Ll A +e KIAA1131 2116 --PRLTVVRK-VDATDASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2162 eteGFgle<-* +GF+l+ KIAA1131 2163 --KGFHLN 2168 PF00632.15.ls: domain 1 of 1, from 1737 to 2168: score 428.4, E = 9.1e-126 *->tLlsrelfnPdygLFeysdd.t.dvn.e........s.g.yaedsyt L++ e +++d+g + ++d+ ++d ++ + +++ +++g y+++s++ KIAA1131 1737 ALVAAEFQRTDLGAWLCDDNfPdDESrHvdlggglkPpGyYVQRSCG 1783 lqinPlssesnpeh..lkyFkFiGrilGlAlyngrlldvpFpraFYKkLL l+ +P + +s+++++ k+F+F+G++l+++++++rl+d+p + +F+K+++ KIAA1131 1784 LFTAPFPQDSDELEriTKLFHFLGIFLAKCIQDNRLVDLPISKPFFKLMC 1833 m.k.gkp........................................... m++ ++ ++ +++++++ + ++++++ ++++++++ + ++ ++++++ KIAA1131 1834 MgDiKSNmskliyesrgdrdlhctesqseasteeghdslsvgsfeedsks 1883 ..................vtleDlesvDPelynSLkwllendgdrh.I.. + ++++++++ ++ +t+eD+e v+P+ +++Lk+++++ + r++I + KIAA1131 1884 efildppkpkppawfngiLTWEDFELVNPHRARFLKEIKDLAIKRRqIls 1933 ...............L.L.g...s.ledveedLeLtFsveeessagfdpd +++ ++++++++ ++L L+++++s+++ ++edL+L+F+ +++s + KIAA1131 1934 nkglsedekntklqeLvLkNpsgSgPPLSIEDLGLNFQFCPSSRI----- 1978 asdfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAF +++ v+ LkP G++ + T +N +eYV+L+ ++ + +gi+kQ+eAF KIAA1131 1979 ----YGFTAVD-LKPSGEDEMITMDNAEEYVDLMFDFCMHTGIQKQMEAF 2023 rkGFnevipsrlLslFdpeELelLicGsp..epiDvddLksnTeYkggYt r+GFn+v+p + Ls F+ eE+++++cG++++ + +d++++Te+k gYt KIAA1131 2024 RDGFNKVFPMEKLSSFSHEEVQMILCGNQspS-WAAEDIINYTEPKLGYT 2072 edsplktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsn +dsp + F +v+ +++++erk++LqF+TG+s +P+gG+++L+ KIAA1131 2073 RDSP--GFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLH----- 2115 GppkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIne p++t++++ v+ +d ++P+++TC+++L+LP+YsS Ei+re+Ll A +e KIAA1131 2116 --PRLTVVRK-VDATDASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2162 eteGFgle<-* +GF+l+ KIAA1131 2163 --KGFHLN 2168 //