hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18113925/chunk_1/iprscan-20080501-18113925.nocrc
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Query sequence: KIAA1129
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                 393.3   1.4e-113   6
SM00225                                                 115.4    6.2e-30   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      88   185 ..     1   114 []   115.4  6.2e-30
SM00612      1/6     340   385 ..     1    55 []    48.2  1.1e-09
SM00612      2/6     386   432 ..     1    55 []    63.1  3.6e-14
SM00612      3/6     433   479 ..     1    55 []    71.1  1.4e-16
SM00612      4/6     480   528 ..     1    55 []    71.9  7.8e-17
SM00612      5/6     529   575 ..     1    55 []    72.7  4.5e-17
SM00612      6/6     576   623 ..     1    55 []    66.3  3.9e-15

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 88 to 185: score 115.4, E = 6.2e-30
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv +v+++         ++++a  H++vLaac   SpyF a+f+++
    KIAA1129    88    CDVMIVAED---------VEIEA--HRVVLAAC---SPYFCAMFTGd 120  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    ++++ ++ie++D      v+  ++  l++++Yt +++++ee   nv+ l
    KIAA1129   121 mseskakkIEIKD------VDGQTLSKLIDYIYTaEIEVTEE---NVQVL 161  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L +A++l    q+ ++++ C++fl+++l   
    KIAA1129   162 LPAASLL----QLMdVRQNCCDFLQSQL    185  

SM00612: domain 1 of 6, from 340 to 385: score 48.2, E = 1.1e-09
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      + +vvGG+ +          + +svE+YD e++ W +++ +p++R++
    KIAA1129   340    VMIVVGGQAP---------KAIRSVECYDFEEDRWDQIAELPSRRCR 377  

                   agvaving<-*
                   agv+++ g   
    KIAA1129   378 AGVVFMAG    385  

SM00612: domain 2 of 6, from 386 to 432: score 63.1, E = 3.6e-14
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      ++Y+vGGf+g        + r+++v+vYD   ++W++++sM+ +Rs 
    KIAA1129   386    HVYAVGGFNG--------SLRVRTVDVYDGVKDQWTSIASMQERRST 424  

                   agvaving<-*
                    g+av+n+   
    KIAA1129   425 LGAAVLND    432  

SM00612: domain 3 of 6, from 433 to 479: score 71.1, E = 1.4e-16
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      ++Y+vGGfdg        ++ l+svE Y+++tn+W  v++M+t+Rs 
    KIAA1129   433    LLYAVGGFDG--------STGLASVEAYSYKTNEWFFVAPMNTRRSS 471  

                   agvaving<-*
                   +gv+v++g   
    KIAA1129   472 VGVGVVEG    479  

SM00612: domain 4 of 6, from 480 to 528: score 71.9, E = 7.8e-17
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k+Y+vGG+dg+ r      q+l++vE+Y+p tn+W  v++M+t+Rsg
    KIAA1129   480    KLYAVGGYDGASR------QCLSTVEQYNPATNEWIYVADMSTRRSG 520  

                   agvaving<-*
                   agv+v+ g   
    KIAA1129   521 AGVGVLSG    528  

SM00612: domain 5 of 6, from 529 to 575: score 72.7, E = 4.5e-17
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      ++Y++GG+dg          + ksvEvYDp tn+W++v++M+++R +
    KIAA1129   529    QLYATGGHDG--------PLVRKSVEVYDPGTNTWKQVADMNMCRRN 567  

                   agvaving<-*
                   agv+++ng   
    KIAA1129   568 AGVCAVNG    575  

SM00612: domain 6 of 6, from 576 to 623: score 66.3, E = 3.9e-15
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvp.sMptpRs
                      ++YvvGG dg        +  l+svE+Y+p t+kW+ +p++M+t+Rs
    KIAA1129   576    LLYVVGGDDG--------SCNLASVEYYNPVTDKWTLLPtNMSTGRS 614  

                   gagvaving<-*
                   +agvavi++   
    KIAA1129   615 YAGVAVIHK    623  

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