hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18081727/chunk_1/iprscan-20080501-18081727.nocrc
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Query sequence: KIAA1127
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00181                                                  90.5      2e-22   6
SM00179                                                  18.0     0.0099   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00181    1/6       2    38 ..     1    32 []    12.7       19
SM00179    1/2      39    70 ..     1    34 []     7.9     0.17
SM00181    2/6      41    70 ..     1    32 []    20.8     0.19
SM00181    3/6      75   105 ..     1    32 []    11.5       25
SM00181    4/6     108   136 ..     1    32 []    14.7       13
SM00181    5/6     139   167 ..     1    32 []    13.4       17
SM00179    2/2     176   211 ..     1    34 []    10.0    0.095
SM00181    6/6     179   211 ..     1    32 []    17.5      1.9

Alignments of top-scoring domains:
SM00181: domain 1 of 6, from 2 to 38: score 12.7, E = 19
                   *->eCa.........pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-*
                      eC+ + ++  ++ C+ +     G Ci   C C  +Gy+g++Ce   
    KIAA1127     2    ECDvpmnqcidpSCGGH-----GSCIDGNCvCS-AGYKGeHCE    38   

SM00179: domain 1 of 2, from 39 to 70: score 7.9, E = 0.17
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                       +D C ++ C+ +G   +C+N++    C C pG+ + nCe   
    KIAA1127    39    EVD-CldpTCSSHG---VCVNgE----ClCSPGWGgLNCE    70   

SM00181: domain 2 of 6, from 41 to 70: score 20.8, E = 0.19
                   *->eCa..pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-*
                      +C+++ Cs +     G+C+  +C C  pG+ g +Ce   
    KIAA1127    41    DCLdpTCSSH-----GVCVNGEClCS-PGWGGlNCE    70   

SM00181: domain 3 of 6, from 75 to 105: score 11.5, E = 25
                   *->eCa.pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                       C + Cs +     Gt ++++  C+C  p ++g+ C    
    KIAA1127    75    QCPdQCSGH-----GTYLpdTGLCsCD-PNWMGpDCS    105  

SM00181: domain 4 of 6, from 108 to 136: score 14.7, E = 13
                   *->eCa.pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-*
                       C+ +C+ +     G+Ci+  C+C  +G+tg  C    
    KIAA1127   108    VCSvDCGTH-----GVCIGGACrCE-EGWTGaACD    136  

SM00181: domain 5 of 6, from 139 to 167: score 13.4, E = 17
                   *->eCa.pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-*
                       C++ C ++     GtC   +C+C+ +G+ g++C    
    KIAA1127   139    VCHpRCIEH-----GTCKDGKCeCR-EGWNGeHCT    167  

SM00179: domain 2 of 2, from 176 to 211: score 10.0, E = 0.095
                   *->DiDEC..pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                        D C+++C  +G   +C+ + +S +C C+ G++++ C    
    KIAA1127   176    ETDGCpdLCNGNG---RCTLgQNSWQCvCQTGWRgPGCN    211  

SM00181: domain 6 of 6, from 179 to 211: score 17.5, E = 1.9
                   *->eCa.pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                       C + C  +     G+C+ + +s++C C+  G++g+ C    
    KIAA1127   179    GCPdLCNGN-----GRCTlgqnSWQCvCQ-TGWRGpGCN    211  

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