hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18081727/chunk_1/iprscan-20080501-18081727.nocrc
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Query sequence: KIAA1127
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00181 90.5 2e-22 6
SM00179 18.0 0.0099 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00181 1/6 2 38 .. 1 32 [] 12.7 19
SM00179 1/2 39 70 .. 1 34 [] 7.9 0.17
SM00181 2/6 41 70 .. 1 32 [] 20.8 0.19
SM00181 3/6 75 105 .. 1 32 [] 11.5 25
SM00181 4/6 108 136 .. 1 32 [] 14.7 13
SM00181 5/6 139 167 .. 1 32 [] 13.4 17
SM00179 2/2 176 211 .. 1 34 [] 10.0 0.095
SM00181 6/6 179 211 .. 1 32 [] 17.5 1.9
Alignments of top-scoring domains:
SM00181: domain 1 of 6, from 2 to 38: score 12.7, E = 19
*->eCa.........pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-*
eC+ + ++ ++ C+ + G Ci C C +Gy+g++Ce
KIAA1127 2 ECDvpmnqcidpSCGGH-----GSCIDGNCvCS-AGYKGeHCE 38
SM00179: domain 1 of 2, from 39 to 70: score 7.9, E = 0.17
*->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
+D C ++ C+ +G +C+N++ C C pG+ + nCe
KIAA1127 39 EVD-CldpTCSSHG---VCVNgE----ClCSPGWGgLNCE 70
SM00181: domain 2 of 6, from 41 to 70: score 20.8, E = 0.19
*->eCa..pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-*
+C+++ Cs + G+C+ +C C pG+ g +Ce
KIAA1127 41 DCLdpTCSSH-----GVCVNGEClCS-PGWGGlNCE 70
SM00181: domain 3 of 6, from 75 to 105: score 11.5, E = 25
*->eCa.pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
C + Cs + Gt ++++ C+C p ++g+ C
KIAA1127 75 QCPdQCSGH-----GTYLpdTGLCsCD-PNWMGpDCS 105
SM00181: domain 4 of 6, from 108 to 136: score 14.7, E = 13
*->eCa.pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-*
C+ +C+ + G+Ci+ C+C +G+tg C
KIAA1127 108 VCSvDCGTH-----GVCIGGACrCE-EGWTGaACD 136
SM00181: domain 5 of 6, from 139 to 167: score 13.4, E = 17
*->eCa.pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-*
C++ C ++ GtC +C+C+ +G+ g++C
KIAA1127 139 VCHpRCIEH-----GTCKDGKCeCR-EGWNGeHCT 167
SM00179: domain 2 of 2, from 176 to 211: score 10.0, E = 0.095
*->DiDEC..pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
D C+++C +G +C+ + +S +C C+ G++++ C
KIAA1127 176 ETDGCpdLCNGNG---RCTLgQNSWQCvCQTGWRgPGCN 211
SM00181: domain 6 of 6, from 179 to 211: score 17.5, E = 1.9
*->eCa.pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
C + C + G+C+ + +s++C C+ G++g+ C
KIAA1127 179 GCPdLCNGN-----GRCTlgqnSWQCvCQ-TGWRGpGCN 211
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