hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18050452/chunk_1/iprscan-20080501-18050452.nocrc
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Query sequence: KIAA1125
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00297                                                  73.3      3e-17   1
SM00249                                                  53.0    3.9e-11   1
SM00293                                                  31.0    0.00016   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/1     109   150 ..     1    39 []    53.0  3.9e-11
SM00297    1/1     166   273 ..     1   118 []    73.3    3e-17
SM00293    1/1     294   344 ..     1    84 []    31.0  0.00016

Alignments of top-scoring domains:
SM00249: domain 1 of 1, from 109 to 150: score 53.0, E = 3.9e-11
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgppleepdg.wyCprCk<-*
                      yC vC+++g+ l+C+  C+r yH +Cl+++ e p+g+w+Cp+C    
    KIAA1125   109    YCwVCHReGqVLCCE-LCPRVYHAkCLRLTSE-PEGdWFCPECE    150  

SM00297: domain 1 of 1, from 166 to 273: score 73.3, E = 3e-17
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      ++ + ++l+ llk  + k+++ g         ++ F++pv+  +  +
    KIAA1125   166    TMLtIEQLSYLLKFAIQKMKQPG---------TDAFQKPVPLEQ--H 201  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDY ++I +PMDL t +k+ ++  Y   e+F+aD + ++ N+ +YN+ ++
    KIAA1125   202 PDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNH 251  

                   evykdAkkLeklfeeklkelpp<-*
                      + Ak   k +e +++e++    
    KIAA1125   252 KLTQIAKVVIKICEHEMNEIEV    273  

SM00293: domain 1 of 1, from 294 to 344: score 31.0, E = 0.00016
                   *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk
                       +p+ lVwAK kGFP+WPA+ ++ k+                     
    KIAA1125   294    SNPHPLVWAKLKGFPFWPAKALRDKD--------------------- 319  

                   leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-*
                              ++++ +FFg +d  awv+ ++        
    KIAA1125   320 -----------GQVDARFFGQHDR-AWVPINNCYLMS    344  

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