hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18013800/chunk_1/iprscan-20080501-18013800.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1123 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00520.21.ls Ion transport protein 643.8 1.3e-190 3 PF00520.21.fs Ion transport protein 638.3 6.1e-189 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00520.21.fs 1/3 228 414 .. 1 224 [] 195.7 9.9e-56 PF00520.21.ls 1/3 228 414 .. 1 224 [] 197.6 2.8e-56 PF00520.21.fs 2/3 763 987 .. 1 224 [] 235.7 9.4e-68 PF00520.21.ls 2/3 763 987 .. 1 224 [] 237.5 2.6e-68 PF00520.21.fs 3/3 1078 1283 .. 1 224 [] 206.8 4.5e-59 PF00520.21.ls 3/3 1078 1283 .. 1 224 [] 208.7 1.3e-59 Alignments of top-scoring domains: PF00520.21.fs: domain 1 of 3, from 228 to 414: score 195.7, E = 9.9e-56 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl i ++vft++F+lEmllk++++g+ f Y+++p Ni+D ++v+ KIAA1123 228 ISNIVFTSLFALEMLLKLLVYGP-------FGYIKNPYNIFDGVIVV 267 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +s ++ i+ +ggg lsvlr++Rl+R KIAA1123 268 IS-VWEIVGQQGGG----------------------LSVLRTFRLMR--- 291 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig +l+l+r+ p l++ l+ l++ + + + +++ll+l++fiF+i+g KIAA1123 292 VLKLVRFLPA-----LQRQ--LVVLMKTMDNVATFCMLLMLFIFIFSILG 334 vqlFggklnkcc..npingntnFdsfgnaflwlFqtmTteGwgdvmpdtl ++lFg k+ + +++ ++ nFds ++a+ ++Fq++T+e+w+ v+++++ KIAA1123 335 MHLFGCKFASERdgDTLPDRKNFDSLLWAIVTVFQILTQEDWNKVLYNGM 384 .agtvlgyiyfvsfiilgsflllNLfiavi<-* +++ ++ +yf++++ +g+++l+NL++a++ KIAA1123 385 aSTSSWAALYFIALMTFGNYVLFNLLVAIL 414 PF00520.21.ls: domain 1 of 3, from 228 to 414: score 197.6, E = 2.8e-56 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl i ++vft++F+lEmllk++++g+ f Y+++p Ni+D ++v+ KIAA1123 228 ISNIVFTSLFALEMLLKLLVYGP-------FGYIKNPYNIFDGVIVV 267 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +s ++ i+ +ggg lsvlr++Rl+R KIAA1123 268 IS-VWEIVGQQGGG----------------------LSVLRTFRLMR--- 291 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig +l+l+r+ p l++ l+ l++ + + + +++ll+l++fiF+i+g KIAA1123 292 VLKLVRFLPA-----LQRQ--LVVLMKTMDNVATFCMLLMLFIFIFSILG 334 vqlFggklnkcc..npingntnFdsfgnaflwlFqtmTteGwgdvmpdtl ++lFg k+ + +++ ++ nFds ++a+ ++Fq++T+e+w+ v+++++ KIAA1123 335 MHLFGCKFASERdgDTLPDRKNFDSLLWAIVTVFQILTQEDWNKVLYNGM 384 .agtvlgyiyfvsfiilgsflllNLfiavi<-* +++ ++ +yf++++ +g+++l+NL++a++ KIAA1123 385 aSTSSWAALYFIALMTFGNYVLFNLLVAIL 414 PF00520.21.fs: domain 2 of 3, from 763 to 987: score 235.7, E = 9.4e-68 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +y+ft++F++Em +k++alg++++ ++Ylrs wN+lD l vl KIAA1123 763 LSNYIFTAVFLAEMTVKVVALGWCFG---EQAYLRSSWNVLDGLLVL 806 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL +s+i++++s++ + +++ +l++lr+lRllR+L KIAA1123 807 ISVIDILVSMVSD-----------------SgT--KILGMLRVLRLLRTL 837 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii R+lr+i+ra+g l+ + + +l+ slk+++n++++++ +++iF+i+ KIAA1123 838 RPLRVISRAQG-----LKLV--VETLMSSLKPIGNIVVICCAFFIIFGIL 880 gvqlFggklnkcc..................npingntnFdsfgnaflwl gvqlF+gk++ c ++++ + ++++++ + + +++ + nFd+ g+a+++l KIAA1123 881 GVQLFKGKFFVCQgedtrnitnksdcaeasyRWVRHKYNFDNLGQALMSL 930 FqtmTteGwgdvmpdtl...........agtvlgyiyfvsfiilgsflll F++++ +Gw+d+m+d+l+ + ++++ ++++++ +yf+sf ++++f++l KIAA1123 931 FVLASKDGWVDIMYDGLdavgvdqqpimNHNPWMLLYFISFLLIVAFFVL 980 NLfiavi<-* N+f++v+ KIAA1123 981 NMFVGVV 987 PF00520.21.ls: domain 2 of 3, from 763 to 987: score 237.5, E = 2.6e-68 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +y+ft++F++Em +k++alg++++ ++Ylrs wN+lD l vl KIAA1123 763 LSNYIFTAVFLAEMTVKVVALGWCFG---EQAYLRSSWNVLDGLLVL 806 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL +s+i++++s++ + +++ +l++lr+lRllR+L KIAA1123 807 ISVIDILVSMVSD-----------------SgT--KILGMLRVLRLLRTL 837 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii R+lr+i+ra+g l+ + + +l+ slk+++n++++++ +++iF+i+ KIAA1123 838 RPLRVISRAQG-----LKLV--VETLMSSLKPIGNIVVICCAFFIIFGIL 880 gvqlFggklnkcc..................npingntnFdsfgnaflwl gvqlF+gk++ c ++++ + ++++++ + + +++ + nFd+ g+a+++l KIAA1123 881 GVQLFKGKFFVCQgedtrnitnksdcaeasyRWVRHKYNFDNLGQALMSL 930 FqtmTteGwgdvmpdtl...........agtvlgyiyfvsfiilgsflll F++++ +Gw+d+m+d+l+ + ++++ ++++++ +yf+sf ++++f++l KIAA1123 931 FVLASKDGWVDIMYDGLdavgvdqqpimNHNPWMLLYFISFLLIVAFFVL 980 NLfiavi<-* N+f++v+ KIAA1123 981 NMFVGVV 987 PF00520.21.fs: domain 3 of 3, from 1078 to 1283: score 206.8, E = 4.5e-59 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl i++y+ftviF+lE ++k++a+gf +++++++wN lD+++vl KIAA1123 1078 ICNYIFTVIFVLESVFKLVAFGF-------RRFFQDRWNQLDLAIVL 1117 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL +s+++++l++ ++ +s +++p++++++r+lR+ R KIAA1123 1118 LSIMGITLEEIEV--------------NASLpINPTIIRIMRVLRIAR-- 1151 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii +l+l+++a g +r l l +++++l++ +n++ll++ll+fiFa + KIAA1123 1152 -VLKLLKMAVG-----MRAL--LDTVMQALPQVGNLGLLFMLLFFIFAAL 1193 gvqlFggklnkcc...npingntnFdsfgnaflwlFqtmTteGwgdvmpd gv lFg+ + ++ +++++ +++ F++fg+afl+lF+++T+++w+++m d KIAA1123 1194 GVELFGDLECDEThpcEGLGRHATFRNFGMAFLTLFRVSTGDNWNGIMKD 1243 tl.........agtvlgyiyfvsfiilgsflllNLfiavi<-* tl++ +++++ +tv++ iyfvsf++ + f+l+N++iav+ KIAA1123 1244 TLrdcdqestcYNTVISPIYFVSFVLTAQFVLVNVVIAVL 1283 PF00520.21.ls: domain 3 of 3, from 1078 to 1283: score 208.7, E = 1.3e-59 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl i++y+ftviF+lE ++k++a+gf +++++++wN lD+++vl KIAA1123 1078 ICNYIFTVIFVLESVFKLVAFGF-------RRFFQDRWNQLDLAIVL 1117 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL +s+++++l++ ++ +s +++p++++++r+lR+ R KIAA1123 1118 LSIMGITLEEIEV--------------NASLpINPTIIRIMRVLRIAR-- 1151 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii +l+l+++a g +r l l +++++l++ +n++ll++ll+fiFa + KIAA1123 1152 -VLKLLKMAVG-----MRAL--LDTVMQALPQVGNLGLLFMLLFFIFAAL 1193 gvqlFggklnkcc...npingntnFdsfgnaflwlFqtmTteGwgdvmpd gv lFg+ + ++ +++++ +++ F++fg+afl+lF+++T+++w+++m d KIAA1123 1194 GVELFGDLECDEThpcEGLGRHATFRNFGMAFLTLFRVSTGDNWNGIMKD 1243 tl.........agtvlgyiyfvsfiilgsflllNLfiavi<-* tl++ +++++ +tv++ iyfvsf++ + f+l+N++iav+ KIAA1123 1244 TLrdcdqestcYNTVISPIYFVSFVLTAQFVLVNVVIAVL 1283 //