# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh01458.fasta.huge -Q ../query/KIAA1123.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1123, 1717 aa vs ./tmplib.24314 library 1985788 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.9677+/-0.00885; mu= -10.8307+/- 0.595 mean_var=366.4868+/-87.663, 0's: 0 Z-trim: 7 B-trim: 0 in 0/40 Lambda= 0.066995 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1120 ( 1024 res) hg02941 (1024) 3071 312.1 4e-85 KIAA1356 ( 519 res) fj01605 ( 519) 516 64.9 5.3e-11 >>KIAA1120 ( 1024 res) hg02941 (1024 aa) initn: 3064 init1: 2761 opt: 3071 Z-score: 1620.1 bits: 312.1 E(): 4e-85 Smith-Waterman score: 3132; 54.886% identity (71.076% similar) in 1013 aa overlap (757-1717:1-994) 730 740 750 760 770 780 KIAA11 KMFDHVVLVIIFLNCITIAMERPKIDPHSAERIFLTLSNYIFTAVFLAEMTVKVVALGWC ::::::.:::::::.:..:::.:::.:: KIAA11 ERIFLTVSNYIFTAIFVGEMTLKVVSLGLY 10 20 30 790 800 810 820 830 840 KIAA11 FGEQAYLRSSWNVLDGLLVLISVIDILVSMVSDSGTKILGMLRVLRLLRTLRPLRVISRA ::::::::::::::::.::..:.:::.::..: .:.::::.::::::::::::::::::: KIAA11 FGEQAYLRSSWNVLDGFLVFVSIIDIVVSLASAGGAKILGVLRVLRLLRTLRPLRVISRA 40 50 60 70 80 90 850 860 870 880 890 900 KIAA11 QGLKLVVETLMSSLKPIGNIVVICCAFFIIFGILGVQLFKGKFFVCQGEDTRNITNKSDC :::::::::.::::::::::.:::::::::::::::::::::. : : :::::::.::: KIAA11 PGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNRSDC 100 110 120 130 140 150 910 920 930 940 950 960 KIAA11 AEASYRWVRHKYNFDNLGQALMSLFVLASKDGWVDIMYDGLDAVGVDQQPIMNHNPWMLL :.::::.:::::::::::::::::::::::::.:::.:::::.:::::. :::::::: KIAA11 MAANYRWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYNGLDAVAVDQQPVTNHNPWMLL 160 170 180 190 200 210 970 980 990 1000 1010 1020 KIAA11 YFISFLLIVAFFVLNMFVGVVVENFHKCRQHQEEEEARRREEKRLRRLEKKRRKAQCKPY :::::::::.::::::::::::::::::::::: :::::::::::::::::::::: :: KIAA11 YFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRKAQRLPY 220 230 240 250 260 270 1030 1040 1050 1060 1070 1080 KIAA11 YSDYSRFRLLVHHLCTSHYLDLFITGVIGLNVVTMAMEHYQQPQILDEALKICNYIFTVI :. : . :::.: .:::::::.::: .: ::::::..:::.:: :. ::: :::.::.. KIAA11 YATYCHTRLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTV 280 290 300 310 320 330 1090 1100 1110 1120 1130 1140 KIAA11 FVLESVFKLVAFGFRRFFQDRWNQLDLAIVLLSIMGITLEEIEVNASLPINPTIIRIMRV ::::.:.::::::.::::.::::::::::::::.:::::::::.::.::::::::::::: KIAA11 FVLEAVLKLVAFGLRRFFKDRWNQLDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRV 340 350 360 370 380 390 1150 1160 1170 1180 1190 1200 KIAA11 LRIARVLKLLKMAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELFGDLECDET :::::::::::::.:::::::::.:::::::::::::::::::.::::::::: : :.. KIAA11 LRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDE 400 410 420 430 440 450 1210 1220 1230 1240 1250 1260 KIAA11 HPCEGLGRHATFRNFGMAFLTLFRVSTGDNWNGIMKDTLRDCDQ-ESTCYNTV--ISPIY .::::..:::::.::::::::::.:::::::::::::::::: . : .: ... .::.: KIAA11 NPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRDCTHDERSCLSSLQFVSPLY 460 470 480 490 500 510 1270 1280 1290 1300 1310 1320 KIAA11 FVSFVLTAQFVLVNVVIAVLMKHLEESNKEAKEEAELEAELELEM-KTLSPQPHSPLGSP ::::::::::::.:::.:::::::..:::::.:.::..::::::: . :.: :. : ::: KIAA11 FVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEDAEMDAELELEMAHGLGPGPRLPTGSP 520 530 540 550 560 570 1330 1340 1350 1360 1370 1380 KIAA11 FLWPGVEGPDSPDS--PKPGALHPAAHARSASHFSLEHPTMQPHPTELPGPDLLTVRKSG :: .:: . . :.: .. . .. :. .. . . : : . :: KIAA11 GA-PG-RGPGGAGGGGDTEGGLCRRCYSPAQENLWLDSVSLIIKDS-LEGELTIIDNLSG 580 590 600 610 620 1390 1400 1410 1420 1430 KIAA11 -VSRTHSLPNDSYMCRHGSTAEGPLGHRGWGLPKAQSGSVLSVHSQP-ADTSYILQLPKD . . .: : :.: . ....: . .:.:.: . : . :: KIAA11 SIFHHYSSPAGCKKCHHDKQEVQLAETEAFSLNSDRSSSILLGDDLSLEDPTACPPGRKD 630 640 650 660 670 680 1440 1450 1460 1470 1480 1490 KIAA11 APHLLQPHSAPTWGTIPKLPPPGRSPLAQRPLRRQAAIRTDSLDVQGLGS--REDLLAEV . :.: : . . : : : : .. . . . . . : ..: KIAA11 SKGELDPPEPMRVGDLGECFFP-LSSTAVSPDPENFLCEMEEIPFNPVRSWLKHDSSQAP 690 700 710 720 730 740 1500 1510 1520 1530 KIAA11 SGP------SPPLARAYSFWGQSSTQAQQHSRSHS------KISKH------MTPPAPCP .: :: : :. . . .:. .. . ::. . .: . : KIAA11 PSPFSPDASSPLLPMPAEFFHPAVSASQKGPEKGTGTGTLPKIALQGSWASLRSPRVNCT 750 760 770 780 790 800 1540 1550 1560 1570 1580 KIAA11 ------GPEPNWGKGPPETRSSLELDTELSWISGD-----LLPPGGQEEPPSPRDLKKCY : . . .: . .::. : : .: : ::. :.:: . KIAA11 LLRQATGSDTSLDASPSSSAGSLQTTLEDSLTLSDSPRRALGPPA---PAPGPRAGLSPA 810 820 830 840 850 860 1590 1600 1610 1620 1630 1640 KIAA11 SVEAQSCQRRPTSWLD----EQRRHSIAVSCLDSGSQPHLGTDPSNL---GGQPLGGPGS . . : . : : .:: :: . : . : : . :::. :: :: :: KIAA11 ARRRLSLRGRGLFSLRGLRAHQRSHSSGGST-SPGCTHHDSMDPSDEEGRGGAGGGGAGS 870 880 890 900 910 920 1650 1660 1670 1680 1690 KIAA11 RPKKKLSPPSIT--IDPPESQGPRTPPSPGICLRRRAPSSDS----KDPLASGPPDSMAA . .. :: :.: . :: : ::.::. :. :..: : :.. ..: KIAA11 EHSETLSSLSLTSLFCPPP---P--PPAPGLTPARKFSSTSSLAAPGRPHAAALAHGLAR 930 940 950 960 970 1700 1710 KIAA11 SPSPKKDVLSLSGLSSDPADLDP ::: : :.:: : KIAA11 SPSWAADR------SKDPPGRAPLPMGLGPLAPPPQPLPGELEPGDAASKRKR 980 990 1000 1010 1020 >>KIAA1356 ( 519 res) fj01605 (519 aa) initn: 447 init1: 186 opt: 516 Z-score: 289.4 bits: 64.9 E(): 5.3e-11 Smith-Waterman score: 516; 30.631% identity (64.565% similar) in 333 aa overlap (1007-1324:7-327) 980 990 1000 1010 1020 1030 KIAA11 FFVLNMFVGVVVENFHKCRQHQEEEEARRREEKRLRRLEKK--RRKAQCKPYYSDYSRFR :.:. :: .: : :: ..:. KIAA13 DIFMTEEQKKYYNAMKKLGSKKPQ-KPIPRPANKFQ 10 20 30 1040 1050 1060 1070 1080 1090 KIAA11 LLVHHLCTSHYLDLFITGVIGLNVVTMAMEHYQQPQILDEALKICNYIFTVIFVLESVFK .: . : . .:. : .: ::.::: .: .: . . .:. : .: :.:. : :.: KIAA13 GMVFDFVTRQVFDISIMILICLNMVTMMVETDDQGKYMTLVLSRINLVFIVLFTGEFVLK 40 50 60 70 80 90 1100 1110 1120 1130 1140 1150 KIAA11 LVAFGFRRFFQDRWNQLDLAIVLLSIMGITLEEIEVNASLPINPTIIRIMRVLRIARVLK ::.. . .: :: .:...:.:::.:. : :. .. . ..::..:..:. ::.:.:. KIAA13 LVSLR-HYYFTIGWNIFDFVVVILSIVGMFLAEM-IEKYF-VSPTLFRVIRLARIGRILR 100 110 120 130 140 150 1160 1170 1180 1190 1200 1210 KIAA11 LLKMAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELFGDLECDETHPCEGLGR :.: : :.:.:: ..:..:: . :.:::..:..::.: .:. :. .. . :. KIAA13 LIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKE-----AGIDD 160 170 180 190 200 1220 1230 1240 1250 1260 KIAA11 HATFRNFGMAFLTLFRVSTGDNWNGIMKDTLR----DCDQEST---------CYNTVISP .:..:: ... ::...:. .:.:.. : ::: .. : : .. KIAA13 MFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPDTIHPGSSVKGDCGNPSVGI 210 220 230 240 250 260 1270 1280 1290 1300 1310 1320 KIAA11 IYFVSFVLTAQFVLVNVVIAVLMKHLEESNKEAKEEAELEAELELEMKTLSPQPHSPLGS ..:::... . .:.::. :::..... ...:. :: .: ..:: . .: .. KIAA13 FFFVSYIIISFLVVVNMYIAVILENFSVATEES---AEPLSEDDFEMFYEVWEKFDPDAT 270 280 290 300 310 320 1330 1340 1350 1360 1370 1380 KIAA11 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSLEHPTMQPHPTELPGPDLLTVRKSGV :. KIAA13 QFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESG 330 340 350 360 370 380 1717 residues in 1 query sequences 1985788 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:10:06 2008 done: Thu Dec 18 15:10:07 2008 Total Scan time: 0.890 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]