hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17550292/chunk_1/iprscan-20080501-17550292.nocrc
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Query sequence: KIAA1119
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1395.4          0   1
SM00015                                                 152.5    4.3e-41   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      68   767 ..     1   771 []  1395.4        0
SM00015    1/6     768   790 ..     1    23 []    22.2    0.074
SM00015    2/6     791   813 ..     1    23 []    23.0    0.041
SM00015    3/6     816   838 ..     1    23 []    21.9    0.091
SM00015    4/6     839   861 ..     1    23 []    21.6     0.11
SM00015    5/6     864   886 ..     1    23 []    36.3  4.2e-06
SM00015    6/6     887   909 ..     1    23 []    27.6   0.0018

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 68 to 767: score 1395.4, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdl.IYTYiGlvLva
                      rnp++++g +D++ L+yL+EpavlhNLk+R+l+  +IYTY+G+vLva
    KIAA1119    68    RNPDILVGENDLTALSYLHEPAVLHNLKVRFLESNhIYTYCGIVLVA 114  

                   vNPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlr
                   +NPY ql piY+++vi +Y+      G+++g++ PH+FA+A+eAY++M r
    KIAA1119   115 INPYEQL-PIYGQDVIYAYS------GQNMGDMDPHIFAVAEEAYKQMAR 157  

                   ekeNQsIiISGESGAGKTEatKkimqYLAavsg..svesvedqiLesNPi
                   + +NQsIi+SGESGAGKT+++K++m+Y+A v+g+ s + +e+++L+s Pi
    KIAA1119   158 DEKNQSIIVSGESGAGKTVSAKYAMRYFATVGGsaSETNIEEKVLASSPI 207  

                   LEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQ
                   +EA GNAKT+RN+NSSRFGK+i+I Fd+  +i+GA++++YLLEKSRVV+Q
    KIAA1119   208 MEAIGNAKTTRNDNSSRFGKYIQIGFDKRYHIIGANMRTYLLEKSRVVFQ 257  

                   akgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfank
                   a++ERNYHIFYQL+a a  ++ kel L+    s+ed++Y++qgg      
    KIAA1119   258 ADDERNYHIFYQLCAAAGLPEFKELALT----SAEDFFYTSQGG------ 297  

                   ryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAIL
                          +++g+DDae+F++    t++A++ lG  e++q+sIF+i+A+IL
    KIAA1119   298 -----DTSIEGVDDAEDFEK----TRQAFTLLGVKESHQMSIFKIIASIL 338  

                   HLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtk
                   HLG + ++++r+  ++++++s   + +  l++ ++LLgv+ +++e++L++
    KIAA1119   339 HLGSVAIQAERD--GDSCSIS---PQDVYLSNFCRLLGVEHSQMEHWLCH 383  

                   RkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl.
                   Rk++t+ e   +++k+++++q+++aR+ALAK+iY+ LF+W+V+ INk+l+
    KIAA1119   384 RKLVTTSE---TYVKTMSLQQVINARNALAKHIYAQLFGWIVEHINKALh 430  

                   ....sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQ
                   ++ ++ +fIGVLDIyGFE Fe+NSFEQfCINyaNEKLQQ+Fn hvFKlEQ
    KIAA1119   431 tslkQHSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNSHVFKLEQ 480  

                   EEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfHAq
                   EEY++E+I+Wt IdF+  DNQpciDLIE+K    lGIl+lLDEeC++   
    KIAA1119   481 EEYMKEQIPWTLIDFY--DNQPCIDLIEAK----LGILDLLDEECKV--- 521  

                   PkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFii
                   PkgTDq++++KL+ +     h++++hf+kp           r+++taFii
    KIAA1119   522 PKGTDQNWAQKLYDR-----HSSSQHFQKP-----------RMSNTAFII 555  

                   kHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqss
                    H+A +V+Y  +GFLeKN+Dt++e+ i++l++Sk+pl+a+LF ++ d   
    KIAA1119   556 VHFADKVEYLSDGFLEKNRDTVYEEQINILKASKFPLVADLFHDDKDPVP 605  

                   saakekssggagksrkagr.r.epskgtisskkrppTvGsqFk.sLneLm
                   +++++k+s  ++++r+a++++++ +      k +++TvG qF++sL  Lm
    KIAA1119   606 ATTPGKGSSSKISVRSARPpMkVSN------KEHKKTVGHQFRtSLHLLM 649  

                   etLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGF
                   etLn+t+PH++RCIKPN+eK+p++Fd+++  +QLr++GvLE+iRI+ aG+
    KIAA1119   650 ETLNATTPHYVRCIKPNDEKLPFHFDPKRAVQQLRACGVLETIRISAAGY 699  

                   PyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslglg
                   P+R+ +++F++RY+vL++k + +           d+k++c+ +L+ l+  
    KIAA1119   700 PSRWAYHDFFNRYRVLVKKRELANT---------DKKAICRSVLENLI-- 738  

                   iegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                        +d++++q+G+TK+F+R +gq+a+LE+lR     
    KIAA1119   739 -----KDPDKFQFGRTKIFFR-AGQVAYLEKLRAD    767  

SM00015: domain 1 of 6, from 768 to 790: score 22.2, E = 0.074
                   *->rleraAiiIQaawRGylaRkryk<-*
                      + + a i+IQ+++RG+l+  +y+   
    KIAA1119   768    KFRTATIMIQKTVRGWLQKVKYH    790  

SM00015: domain 2 of 6, from 791 to 813: score 23.0, E = 0.041
                   *->rleraAiiIQaawRGylaRkryk<-*
                      rl+ a + +Q+++RG+laR+      
    KIAA1119   791    RLKGATLTLQRYCRGHLARRLAE    813  

SM00015: domain 3 of 6, from 816 to 838: score 21.9, E = 0.091
                   *->rleraAiiIQaawRGylaRkryk<-*
                      r+ raA+++Q+++R+ +aR+ y+   
    KIAA1119   816    RRIRAAVVLQKHYRMQRARQAYQ    838  

SM00015: domain 4 of 6, from 839 to 861: score 21.6, E = 0.11
                   *->rleraAiiIQaawRGylaRkryk<-*
                      r++raA++IQa+ R   +R+ y+   
    KIAA1119   839    RVRRAAVVIQAFTRAMFVRRTYR    861  

SM00015: domain 5 of 6, from 864 to 886: score 36.3, E = 4.2e-06
                   *->rleraAiiIQaawRGylaRkryk<-*
                       +e+ A+ IQ+++RG++aR++++   
    KIAA1119   864    LMEHKATTIQKHVRGWMARRHFQ    886  

SM00015: domain 6 of 6, from 887 to 909: score 27.6, E = 0.0018
                   *->rleraAiiIQaawRGylaRkryk<-*
                      rl+ aAi+IQ a+R+ +aR++ k   
    KIAA1119   887    RLRDAAIVIQCAFRMLKARRELK    909  

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