hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17452255/chunk_1/iprscan-20080501-17452255.nocrc
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Query sequence: KIAA1113
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00643.14.ls B-box zinc finger 110.7 3.9e-30 2
PF00643.14.fs B-box zinc finger 106.9 5.4e-29 2
PF00439.15.fs Bromodomain 73.3 4.6e-20 1
PF00439.15.ls Bromodomain 73.4 6.6e-19 1
PF00628.19.fs PHD-finger 49.6 1.7e-15 2
PF00628.19.ls PHD-finger 49.1 1.4e-11 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00643.14.fs 1/2 216 263 .. 1 50 [] 49.3 5.9e-12
PF00643.14.ls 1/2 216 263 .. 1 50 [] 51.3 3.1e-12
PF00643.14.ls 2/2 275 316 .. 1 50 [] 59.5 1e-14
PF00643.14.fs 2/2 275 316 .. 1 50 [] 57.6 3.7e-14
PF00628.19.fs 2/2 893 936 .. 1 49 [. 46.9 1.2e-14
PF00628.19.ls 1/1 893 938 .. 1 51 [] 49.1 1.4e-11
PF00439.15.ls 1/1 966 1055 .. 1 92 [] 73.4 6.6e-19
PF00439.15.fs 1/1 983 1055 .. 19 92 .] 73.3 4.6e-20
Alignments of top-scoring domains:
PF00643.14.fs: domain 1 of 2, from 216 to 263: score 49.3, E = 5.9e-12
*->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
+ e+vC++++dn+ + FC+++g++LC +C ++ Hq++k++++H +
KIAA1113 216 KSEQVCTSCEDNASAVGFCVECGEWLCKTCIEA--HQRVKFTKDHLI 260
vpl<-*
+
KIAA1113 261 RKK 263
PF00643.14.ls: domain 1 of 2, from 216 to 263: score 51.3, E = 3.1e-12
*->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
+ e+vC++++dn+ + FC+++g++LC +C ++ Hq++k++++H +
KIAA1113 216 KSEQVCTSCEDNASAVGFCVECGEWLCKTCIEA--HQRVKFTKDHLI 260
vpl<-*
+
KIAA1113 261 RKK 263
PF00643.14.ls: domain 2 of 2, from 275 to 316: score 59.5, E = 1e-14
*->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
+++++Cp+H+ +e+l+lFCe+++ l+C++C+l eH + H++
KIAA1113 275 QRPVFCPVHK-QEQLKLFCETCDRLTCRDCQLL-EH------KEHRY 313
vpl<-*
++l
KIAA1113 314 QFL 316
PF00643.14.fs: domain 2 of 2, from 275 to 316: score 57.6, E = 3.7e-14
*->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
+++++Cp+H+ +e+l+lFCe+++ l+C++C+l eH + H++
KIAA1113 275 QRPVFCPVHK-QEQLKLFCETCDRLTCRDCQLL-EH------KEHRY 313
vpl<-*
++l
KIAA1113 314 QFL 316
PF00628.19.fs: domain 2 of 2, from 893 to 936: score 46.9, E = 1.2e-14
*->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
+C+vC+ ggdll+C++C++ fHl C+ p+l p+++W+C
KIAA1113 893 WCAVCQN-----GGDLLCCEKCPKVFHLTCHVPTLL--SFPSgdWIC 932
peCk<-*
C+
KIAA1113 933 TFCR 936
PF00628.19.ls: domain 1 of 1, from 893 to 938: score 49.1, E = 1.4e-11
*->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
+C+vC+ ggdll+C++C++ fHl C+ p+l p+++W+C
KIAA1113 893 WCAVCQN-----GGDLLCCEKCPKVFHLTCHVPTLL--SFPSgdWIC 932
peCkpk<-*
C+
KIAA1113 933 TFCRDI 938
PF00439.15.ls: domain 1 of 1, from 966 to 1055: score 73.4, E = 6.6e-19
*->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
++ + +l++l h+ ++ f +pV +s +P+YY+iIkkPMDL+
KIAA1113 966 DQRKCERLLLYLYCHE-LSIEFQEPVPAS---IPNYYKIIKKPMDLS 1008
TIkkklkngk...YissleeFvaDfnLmfsNAktYNepdsevykdAkk<-
T+kkkl++ ++++Y + +++FvaD++L+f+N+ +Ne +v +A +
KIAA1113 1009 TVKKKLQKKHsqhY-QIPDDFVADVRLIFKNCERFNEMMKVVQVYADT 1055
*
KIAA1113 - -
PF00439.15.fs: domain 1 of 1, from 983 to 1055: score 73.3, E = 4.6e-20
*->alpflfpVlpsklelPDYYeiIkkPMDLkTIkkklkngk...Yissl
++ f +pV +s +P+YY+iIkkPMDL+T+kkkl++ ++++Y + +
KIAA1113 983 SIEFQEPVPAS---IPNYYKIIKKPMDLSTVKKKLQKKHsqhY-QIP 1025
eeFvaDfnLmfsNAktYNepdsevykdAkk<-*
++FvaD++L+f+N+ +Ne +v +A +
KIAA1113 1026 DDFVADVRLIFKNCERFNEMMKVVQVYADT 1055
//