hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17362658/chunk_1/iprscan-20080501-17362658.nocrc
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Query sequence: KIAA1108
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00164                                                 309.3    2.8e-88   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00164    1/1     392   612 ..     1   310 []   309.3  2.8e-88

Alignments of top-scoring domains:
SM00164: domain 1 of 1, from 392 to 612: score 309.3, E = 2.8e-88
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      v++Gvp+++Rge+Wk+L+++ + +++ + ++q+              
    KIAA1108   392    VGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQP-------------- 424  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                    ++ +Y +ll+q  ++++                                
    KIAA1108   425 -KDVPYKELLKQLTSQQH-------------------------------- 441  

                   dqIekDlkRtfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                    +I +Dl Rtfp++++F               + g+gq sL+++LkaYsl
    KIAA1108   442 -AILIDLGRTFPTHPYFSA-------------QLGAGQLSLYNILKAYSL 477  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   +++e  vgYcQG++f+a++LLl+m   +Ee+AF ++++Lm+++++++ + 
    KIAA1108   478 LDQE--VGYCQGLSFVAGILLLHM---SEEEAFKMLKFLMFDMGLRKQY- 521  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                         +pd+  lq+++++l++ll++y+ +Ly+HL+e+            
    KIAA1108   522 ------RPDMIILQIQMYQLSRLLHDYHRDLYNHLEEH------------ 553  

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                   ei pslya++WfLt+Fa+++Pl++v+R++D++f++    g e++fk+al+
    KIAA1108   554 EIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ----GTEVIFKVALS 599  

                   iLklnedkllkld<-*
                   +L ++++++l++    
    KIAA1108   600 LLGSHKPLILQHE    612  

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