hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17263194/chunk_1/iprscan-20080501-17263194.nocrc
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Query sequence: KIAA1102
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00307.21.fs Calponin homology (CH) domain                   48.0    3.2e-12   1
PF00307.21.ls Calponin homology (CH) domain                   49.6    9.9e-12   1
PF00412.12.ls LIM domain                                      20.1    2.3e-05   1
PF00412.12.fs LIM domain                                      18.1    0.00013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00307.21.ls   1/1      40   156 ..     1   122 []    49.6  9.9e-12
PF00307.21.fs   1/1      47   156 ..     8   122 .]    48.0  3.2e-12
PF00412.12.fs   1/1    1031  1094 ..     1    61 []    18.1  0.00013
PF00412.12.ls   1/1    1031  1094 ..     1    61 []    20.1  2.3e-05

Alignments of top-scoring domains:
PF00307.21.ls: domain 1 of 1, from 40 to 156: score 49.6, E = 9.9e-12
                   *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca
                      ++  e+ +W+++v++  +g            ++f t +  +G++Lc 
    KIAA1102    40    PAFSEAQKWIEQVTGRSFG-----------DKDFRTGLE-NGILLCE 74   

                   LlnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeD
                   Lln+++Pgl++k++ +  +++  l+N+ l+l  +++ Gl +  +l+dp D
    KIAA1102    75 LLNAIKPGLVKKIN-RLPTPIAGLDNIILFLRGCKELGLKE-SQLFDPSD 122  

                   ive.............gnpdPDeklvltllwqLirrfq<-*
                   + +++++ + ++ + +++     k vl ++ +L ++++   
    KIAA1102   123 LQDtsnrvtvksldysRKL----KNVLVTIYWLGKAAN    156  

PF00307.21.fs: domain 1 of 1, from 47 to 156: score 48.0, E = 3.2e-12
                   *->rWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLcaLlnklrP
                      +W+++v++  +g            ++f t +  +G++Lc Lln+++P
    KIAA1102    47    KWIEQVTGRSFG-----------DKDFRTGLE-NGILLCELLNAIKP 81   

                   glidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDive....
                   gl++k++ +  +++  l+N+ l+l  +++ Gl +  +l+dp D+ +++++
    KIAA1102    82 GLVKKIN-RLPTPIAGLDNIILFLRGCKELGLKE-SQLFDPSDLQDtsnr 129  

                   .........gnpdPDeklvltllwqLirrfq<-*
                    + ++ + +++     k vl ++ +L ++++   
    KIAA1102   130 vtvksldysRKL----KNVLVTIYWLGKAAN    156  

PF00412.12.fs: domain 1 of 1, from 1031 to 1094: score 18.1, E = 0.00013
                   *->CagCgkpIy.drelvrrAldkvwHpeCFrCavCgkpLgegde...ff
                      C++Cg p  +++ + +  l+ ++H+ CFrC  C+ +Lg+  +++++ 
    KIAA1102  1031    CSSCGLPLGkGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSgtdVR 1077 

                   ekdgsklYCkhDyyklfg<-*
                   +++g +l C  +y + ++   
    KIAA1102  1078 IRNG-LLNCNDCYMRSRS    1094 

PF00412.12.ls: domain 1 of 1, from 1031 to 1094: score 20.1, E = 2.3e-05
                   *->CagCgkpIy.drelvrrAldkvwHpeCFrCavCgkpLgegde...ff
                      C++Cg p  +++ + +  l+ ++H+ CFrC  C+ +Lg+  +++++ 
    KIAA1102  1031    CSSCGLPLGkGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSgtdVR 1077 

                   ekdgsklYCkhDyyklfg<-*
                   +++g +l C  +y + ++   
    KIAA1102  1078 IRNG-LLNCNDCYMRSRS    1094 

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