hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17245511/chunk_1/iprscan-20080501-17245511.nocrc
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Query sequence: KIAA1101
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 193.2    2.4e-53   1
SM00219                                                  16.9    3.5e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1       3   231 ..     1   280 []    16.9  3.5e-12
SM00220    1/1       3   231 ..     1   231 []   193.2  2.4e-53

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 3 to 231: score 16.9, E = 3.5e-12
                   *->ltlgkkLGeGaFGeVykGtlkieVAVKtLkedakeeFlrEakiMkkl
                                                             E++ M++ 
    KIAA1101     3    ---------------------------------------EIQAMSQC 10   

                   GgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrknrpk.
                     +HpNiV  +   + +       + l++vm + +gG+ ld + k+   +
    KIAA1101    11 --HHPNIVSYYTSFVVK-------DELWLVMKLLSGGSVLDII-KHIVAk 50   

                   .......lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvv
                   ++++++ l  s+   +   + +G eYL++++ +HRD  A N+L+ge++ v
    KIAA1101    51 gehksgvLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSV 100  

                   KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl..kd
                    I+DFG s +l  +      +d  r k    + ++    WmAPE++++  
    KIAA1101   101 QIADFGVSAFLATG------GDITRNKV--RKTFVGTPCWMAPEVMeqVR 142  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                   g + +k D+WSFG++  E+ t  ++ +        + + ++  l++   +
    KIAA1101   143 G-YDFKADIWSFGITAIELATGAAPYHKY-----PPMKVLMLTLQND--P 184  

                   pkPendl...p.iSsvtCPdelYd.lMlqCWaedPedRPtFsel..verl
                   p  e + ++++ +       + ++++++ C + dPe+RPt +el +++++
    KIAA1101   185 PSLETGVqdkEmL---KKYGKSFRkMISLCLQKDPEKRPTAAELlrHKFF 231  

                   <-*
                      
    KIAA1101     -     -    

SM00220: domain 1 of 1, from 3 to 231: score 193.2, E = 2.4e-53
                   *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkk.d
                                                            Ei+ +++ +
    KIAA1101     3    --------------------------------------EIQAMSQcH 11   

                   HPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglrk..vls
                   HPNIV +y +f+ +d+l+lVm +++G  G+++d++k+   +g +k++vl+
    KIAA1101    12 HPNIVSYYTSFVVkDELWLVMKLLSG--GSVLDIIKHIVAKGEHKsgVLD 59   

                   E.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDFGlAr
                   E++++ ++r++l++LeYLH++g iHRD+K  NiLL +++ v +aDFG+++
    KIAA1101    60 EsTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEdgSVQIADFGVSA 109  

                   ql............ttfvGTpeYmAPEvl....gYgkpavDiWSlGcily
                   +l ++++ ++++ ++tfvGTp +mAPEv+++ +gY++ ++DiWS+G++ +
    KIAA1101   110 FLatggditrnkvrKTFVGTPCWMAPEVMeqvrGYDF-KADIWSFGITAI 158  

                   ElltGkpPFp..qldlifkkig....................SpeakdLi
                   El+tG  P+++  +++++ + + +++++ +++  +++  +++ ++++ +i
    KIAA1101   159 ELATGAAPYHkyPPMKVLMLTLqndppsletgvqdkemlkkyGKSFRKMI 208  

                   kklLvkdPekRlta.eaLedeldikaHPff<-*
                   + +L+kdPekR+ta e+L+       H ff   
    KIAA1101   209 SLCLQKDPEKRPTAaELLR-------HKFF    231  

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